PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019199992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 257aa MW: 27438.6 Da PI: 7.1241 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.5 | 1.2e-39 | 52 | 153 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael XP_019199992.1 52 PCGACKFLRRKCVSSCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 146 7***********************9989******************************************************************* PP DUF260 95 allkeel 101 a++++++ XP_019199992.1 147 AMVQTQI 153 **99885 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence |
MDAQSHPHSD GGGSSSAEAA PRRKCTGKRA APESGATPPP AAPVAAITIQ APCGACKFLR 60 RKCVSSCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLLH IPANRRHDAV VTISYEAQAR 120 LSDPVYGCVS TILALQQQVA SLQAELAMVQ TQIMNSRFAV ANALQTSQQQ QQQQQQQHAV 180 AAAVLQPAYS NTSSASNNLL NISNFSSNFD LVGETTGAPH NSHCFDPIVQ LSHPSQEEEE 240 DEEQSHNPIA FTNHMFR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-57 | LBD family protein |