PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199986.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 307aa MW: 33817.1 Da PI: 9.3299

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92.6	8.2e-29	51	122	3	74
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasece 74 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl + k +i++l+ ++++++s+++ XP_019199986.1 51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLTQPSKVVDWLLDATKLEIDKLPPLPFPPSSFSS 122 79*****************************************************************97773 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MMNISKQEEG CDGKNKEEEE MMRKLGSSSS SRQWGGAFKN PRIVRVSRSF GGKDRHSKVC 60 TIRGLRDRRI RLSVPTAIQL YDLQDRLGLT QPSKVVDWLL DATKLEIDKL PPLPFPPSSF 120 SSAFDHPSPL LQPPLAAAPP PPHHDVKAIG KQKWIEEDGG AGALALAAAY NNNNNVVVPQ 180 NFFPHKWIEP FPSSYNHWEP STLSLAQFHD SHNNNPNNLY FPSILPPPYM AAASEAGAGA 240 AHFHHLLNTT TTSTSSLIQN PVLLPPTLHF ISSPMKSSSS PYAKDHLSSS SLTDNNHNHL 300 QKSSRGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	3e-42	TCP family protein