PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199877.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 474aa MW: 51283.9 Da PI: 8.1936

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.4	7.4e-42	153	228	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dl+++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++ XP_019199877.1 153 CQVQGCKKDLTSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 228 **************************************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MGSWSYLSGG GGGGGGGGKG LVCDESVSMS DHGVARSRNN GLMGWELSGF EGIGNQGFVE 60 LGSQDLVRKA AMANNNSRGF AGFHNVFSRE DDSSPNSRDS SLIDLKLGGF PDHIKPPKPN 120 NTSSSSSAQS SAPAKRFRGG GGGTNSHQTP PYCQVQGCKK DLTSCKDYHK RHKVCEVHSK 180 TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPHTA TRFQGTAFST 240 SSFVCQDILP GSLLHPQKYE TNDWYRNVKV EEGTDFCPQL AIPLTNGSYN SEKHCPHESS 300 NSYLHEMAGQ DFVPRAVYHH STTLGSEVLS CSIQGLSGIS NSGRALSLLS SHSQTSGAHS 360 LINPGTNEHY DMAQVSEKLL GVSPPASTTA LSPSEDARLQ QMMLFSNAAQ TYAINPIVQG 420 SGYVNVKNQI SGEEQHGPTI DLLQLSSQLQ RVEHERHSVQ VKQESGAFSG LRIT

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MGSWSYLSGG GGGGGGGGKG LVCDESVSMS DHGVARSRNN GLMGWELSGF EGIGNQGFVE  60
LGSQDLVRKA AMANNNSRGF AGFHNVFSRE DDSSPNSRDS SLIDLKLGGF PDHIKPPKPN  120
NTSSSSSAQS SAPAKRFRGG GGGTNSHQTP PYCQVQGCKK DLTSCKDYHK RHKVCEVHSK  180
TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPHTA TRFQGTAFST  240
SSFVCQDILP GSLLHPQKYE TNDWYRNVKV EEGTDFCPQL AIPLTNGSYN SEKHCPHESS  300
NSYLHEMAGQ DFVPRAVYHH STTLGSEVLS CSIQGLSGIS NSGRALSLLS SHSQTSGAHS  360
LINPGTNEHY DMAQVSEKLL GVSPPASTTA LSPSEDARLQ QMMLFSNAAQ TYAINPIVQG  420
SGYVNVKNQI SGEEQHGPTI DLLQLSSQLQ RVEHERHSVQ VKQESGAFSG LRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-48	SBP family protein