PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199876.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 489aa MW: 52947.7 Da PI: 8.43

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.8	5.6e-42	153	228	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dl+++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++ XP_019199876.1 153 CQVQGCKKDLTSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 228 **************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MGSWSYLSGG GGGGGGGGKG LVCDESVSMS DHGVARSRNN GLMGWELSGF EGIGNQGFVE 60 LGSQDLVRKA AMANNNSRGF AGFHNVFSRE DDSSPNSRDS SLIDLKLGGF PDHIKPPKPN 120 NTSSSSSAQS SAPAKRFRGG GGGTNSHQTP PYCQVQGCKK DLTSCKDYHK RHKVCEVHSK 180 TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPHTG MHSARTGRLF 240 QSYAATRFQG TAFSTSSFVC QDILPGSLLH PQKYETNDWY RNVKVEEGTD FCPQLAIPLT 300 NGSYNSEKHC PHESSNSYLH EMAGQDFVPR AVYHHSTTLG SEVLSCSIQG LSGISNSGRA 360 LSLLSSHSQT SGAHSLINPG TNEHYDMAQV SEKLLGVSPP ASTTALSPSE DARLQQMMLF 420 SNAAQTYAIN PIVQGSGYVN VKNQISGEEQ HGPTIDLLQL SSQLQRVEHE RHSVQVKQES 480 GAFSGLRIT

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MGSWSYLSGG GGGGGGGGKG LVCDESVSMS DHGVARSRNN GLMGWELSGF EGIGNQGFVE  60
LGSQDLVRKA AMANNNSRGF AGFHNVFSRE DDSSPNSRDS SLIDLKLGGF PDHIKPPKPN  120
NTSSSSSAQS SAPAKRFRGG GGGTNSHQTP PYCQVQGCKK DLTSCKDYHK RHKVCEVHSK  180
TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPHTG MHSARTGRLF  240
QSYAATRFQG TAFSTSSFVC QDILPGSLLH PQKYETNDWY RNVKVEEGTD FCPQLAIPLT  300
NGSYNSEKHC PHESSNSYLH EMAGQDFVPR AVYHHSTTLG SEVLSCSIQG LSGISNSGRA  360
LSLLSSHSQT SGAHSLINPG TNEHYDMAQV SEKLLGVSPP ASTTALSPSE DARLQQMMLF  420
SNAAQTYAIN PIVQGSGYVN VKNQISGEEQ HGPTIDLLQL SSQLQRVEHE RHSVQVKQES  480
GAFSGLRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-48	SBP family protein