PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199799.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 301aa MW: 34076.4 Da PI: 8.5014

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199799.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.2e-41	25	101	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+++eyhrrhkvCe hsk+++v+v g+e rfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_019199799.1 25 CLVDGCNADLSQCREYHRRHKVCELHSKTAKVTVGGRELRFCQQCSRFHSLTEFDEGKRSCRKRLDGHNKRRRKPQP 101 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MESSSSSSSS KRAKAPGNAV QVANCLVDGC NADLSQCREY HRRHKVCELH SKTAKVTVGG 60 RELRFCQQCS RFHSLTEFDE GKRSCRKRLD GHNKRRRKPQ PDNNLNKSSG LLYSPSQQGA 120 KLLQFGSSHH QMFPSASAWS SSSGVIQAEN DMMLYNNQHH FNYMDTQKAF QQDHRHDYKE 180 VNQFQFMQGG SSSDRIFPEA SISQPQHINI NNSAASRQRV FHGGYDDSDH RALSLLSSSP 240 AVTTHTFTTP HHHPQPLPHA LHYEPLSTHY SFSQETDETK PPRVSQEPDS SPHQTLTFSW 300 E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	99	KRSCRKRLDGHNKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-44	SBP family protein