PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199796.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 302aa MW: 34147.5 Da PI: 8.5014

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.2e-41	25	101	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+++eyhrrhkvCe hsk+++v+v g+e rfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_019199796.1 25 CLVDGCNADLSQCREYHRRHKVCELHSKTAKVTVGGRELRFCQQCSRFHSLTEFDEGKRSCRKRLDGHNKRRRKPQP 101 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MESSSSSSSS KRAKAPGNAV QVANCLVDGC NADLSQCREY HRRHKVCELH SKTAKVTVGG 60 RELRFCQQCS RFHSLTEFDE GKRSCRKRLD GHNKRRRKPQ PDNNLNKSSG LLYSPSQQAG 120 AKLLQFGSSH HQMFPSASAW SSSSGVIQAE NDMMLYNNQH HFNYMDTQKA FQQDHRHDYK 180 EVNQFQFMQG GSSSDRIFPE ASISQPQHIN INNSAASRQR VFHGGYDDSD HRALSLLSSS 240 PAVTTHTFTT PHHHPQPLPH ALHYEPLSTH YSFSQETDET KPPRVSQEPD SSPHQTLTFS 300 WE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	99	KRSCRKRLDGHNKRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	9e-44	SBP family protein