PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199537.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 811aa    MW: 89990.5 Da    PI: 7.2048
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24179280199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+++gL +gD v+F   + ++
  XP_019199537.1 179 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKGLVSGDAVLFL--RGEG 270
                     99****************************86333.45679************************************************..4489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+++++r+
  XP_019199537.1 271 GDLRLGIRRA 280
                     999**99986 PP
2Auxin_resp108.38.3e-36305386182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     + +a+s ks+F+v+Y+ ras+++F+v+++k++k++++++ vG+Rfkm+++ +ds+err+sG+v+g+sdldp+rWp+SkWr+L
  XP_019199537.1 305 VTNAVSCKSTFHVFYSLRASHADFIVPYQKYVKSINNRIPVGTRFKMRYDYDDSPERRFSGIVTGISDLDPYRWPGSKWRCL 386
                     57899****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    
MEIDLNHAVS GGVEEKKQKN ASFCNGECEK GGGLSTSTSS SCSSSSNAFS SSSSAPPSSI  60
YMELWHACAG PLTSLPKKGN VVLYFPQGHL EQASPFPPTF QMDLPTLPLH PQIFCSVQDV  120
QLLANKENDE VYTKLTLLPI PEPVGMNLEG KEHGDLGIDE DGGGGGGGAA PVKLTSHMFC  180
KTLTASDTST HGGFSVPRRA AEDCFPPLDY KEQRPSQELV AKDLHGVEWK FRHIYRGQPR  240
RHLLTTGWSI FVSQKGLVSG DAVLFLRGEG GDLRLGIRRA ARPRNGLPES IIKNQTSYSS  300
VLSAVTNAVS CKSTFHVFYS LRASHADFIV PYQKYVKSIN NRIPVGTRFK MRYDYDDSPE  360
RRFSGIVTGI SDLDPYRWPG SKWRCLMVRW DDDVMSNHQE RVSPWDIDSS VSLPPLNIQS  420
SPRMKKLRAS QPALPHESHF SDMEESIRSS KVLQGQENIG LISPLYGKIN CHPEFEQQTV  480
PRRDFMPAGI EKTKLGELFQ TQPPAMYTGF LESNRFPKVL QGQEICSLRS FAGKKDVKFG  540
SWAKPEQGCN VFQAYQSPKN NFYHLDSQGM RNNTFLPYNG IYRAGQNPVM FPHMNDYPRE  600
NHVLKPISIQ NGKRREEGTI QNFTSEQSPL EKPSKLATPE AHFKDEKSDP LSGTGGPCKL  660
FGFSLTKEPS TLSSQGSSKR SCTKVHKQGS LVGRAIDLSR LNGYEDLLIE LEKLFGMEGL  720
LRDPNKGWRI LYTDSENDMM VVGDDPWHEF CEVVSKIHIY TQEEVEKMSI GGISDDTQSC  780
LEEAPPVTTD ASKSSSVGLP NPNSSPTVSK I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein