PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199266.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 729aa    MW: 81779.3 Da    PI: 5.0071
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199266.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.16.4e-1103557261373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+ v+++d + a++ L+++++++sp+gd++qRla +f+++L+arla+++++ly+al+p++ +     e+l+a++++  ++P+ k++ 
  XP_019199266.1 355 LRTLLISCAQSVAADDRRTANEQLKQIRQHSSPNGDANQRLANVFANGLEARLAGTGTRLYAALAPKRIT---AFEKLKAYQAYMSACPFKKIAM 446
                     6789***************************************************************999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN++I++   g+ ++H+iDf+i +G+QWp L+q L+sRp+gpp+lR+Tg++ p++g   +e++eetg+rL k++e++gvpfe+n+++++++e+
  XP_019199266.1 447 MFANKMIYKISLGAPTLHVIDFGILYGFQWPILIQHLSSRPGGPPKLRVTGIDLPQPGfrPAEMIEETGRRLGKYCERFGVPFEYNAIATQNWET 541
                     *********************************************************9*9****************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L++ +gE++aVn+ ++ ++llde+v+++s+rd+vL+l+++++P ++v++  + +++++ F++rf eal ++salfd+++a++pr++++r 
  XP_019199266.1 542 IKIEDLKLVSGEVVAVNCLYRFKNLLDETVAVDSPRDAVLSLIRKINPSIFVHAVINGSYSAPFFVTRFREALFHFSALFDMFDATIPRDDQHRF 636
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       E+e+ gre  nv+aceg er+er et+++W+ r ++aGFk +pl+ + +++ +      + + +  +e+ +++++gWk+r + + S+W
  XP_019199266.1 637 HFEQEFYGRETLNVIACEGVERVERAETYKQWQVRTMRAGFKLLPLNPELMTKLSEKKGAGYHRDFLFDEDGKWMLQGWKGRLICASSCW 726
                     ****************************************************9998887777788************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    
MDPRFTGLPD SVSSFKVEDE FFFSSFQQSQ DIIPNNYLDD SLPLDFMAVP LNPLITPSPE  60
TGYFPPPAEL DSPDDQDADP VLKYLNQILL EENIDEKPSM FHDPIALKAA EKSFYEALAK  120
GPPSPYHTES PDSLFGNSCE PSTSSSTIGS SNTDPLWIVE PGESKSSFAS YPPFHSSFET  180
TSERSNGSLD GFGGNMNVQM DSLSNANVLA NIFTDTDSIL QFKRGMEEAS KFLPASNQLV  240
IDLDQYSLPP KTEELPRDTL IKAENIERDS SHNSSRGRKH HHLEDDEFEE ERSSKQSAVY  300
VEEELSELFD KVLLCNPNEC ALTNRPPPSE VDKGVPNSGK SRSKKLGATN EAVDLRTLLI  360
SCAQSVAADD RRTANEQLKQ IRQHSSPNGD ANQRLANVFA NGLEARLAGT GTRLYAALAP  420
KRITAFEKLK AYQAYMSACP FKKIAMMFAN KMIYKISLGA PTLHVIDFGI LYGFQWPILI  480
QHLSSRPGGP PKLRVTGIDL PQPGFRPAEM IEETGRRLGK YCERFGVPFE YNAIATQNWE  540
TIKIEDLKLV SGEVVAVNCL YRFKNLLDET VAVDSPRDAV LSLIRKINPS IFVHAVINGS  600
YSAPFFVTRF REALFHFSAL FDMFDATIPR DDQHRFHFEQ EFYGRETLNV IACEGVERVE  660
RAETYKQWQV RTMRAGFKLL PLNPELMTKL SEKKGAGYHR DFLFDEDGKW MLQGWKGRLI  720
CASSCWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein