PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199264.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 755aa    MW: 84806.9 Da    PI: 5.057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3597e-1103817521373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+ v+++d + a++ L+++++++sp+gd++qRla +f+++L+arla+++++ly+al+p++ +     e+l+a++++  ++P+ k++ 
  XP_019199264.1 381 LRTLLISCAQSVAADDRRTANEQLKQIRQHSSPNGDANQRLANVFANGLEARLAGTGTRLYAALAPKRIT---AFEKLKAYQAYMSACPFKKIAM 472
                     6789***************************************************************999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN++I++   g+ ++H+iDf+i +G+QWp L+q L+sRp+gpp+lR+Tg++ p++g   +e++eetg+rL k++e++gvpfe+n+++++++e+
  XP_019199264.1 473 MFANKMIYKISLGAPTLHVIDFGILYGFQWPILIQHLSSRPGGPPKLRVTGIDLPQPGfrPAEMIEETGRRLGKYCERFGVPFEYNAIATQNWET 567
                     *********************************************************9*9****************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L++ +gE++aVn+ ++ ++llde+v+++s+rd+vL+l+++++P ++v++  + +++++ F++rf eal ++salfd+++a++pr++++r 
  XP_019199264.1 568 IKIEDLKLVSGEVVAVNCLYRFKNLLDETVAVDSPRDAVLSLIRKINPSIFVHAVINGSYSAPFFVTRFREALFHFSALFDMFDATIPRDDQHRF 662
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       E+e+ gre  nv+aceg er+er et+++W+ r ++aGFk +pl+ + +++ +      + + +  +e+ +++++gWk+r + + S+W
  XP_019199264.1 663 HFEQEFYGRETLNVIACEGVERVERAETYKQWQVRTMRAGFKLLPLNPELMTKLSEKKGAGYHRDFLFDEDGKWMLQGWKGRLICASSCW 752
                     ****************************************************9998887777788************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    
MHIFSCLVLF SVPYIPTMDT GFLHIYMDPR FTGLPDSVSS FKVEDEFFFS SFQQSQDIIP  60
NNYLDDSLPL DFMAVPLNPL ITPSPETGYF PPPAELDSPD DQDADPVLKY LNQILLEENI  120
DEKPSMFHDP IALKAAEKSF YEALAKGPPS PYHTESPDSL FGNSCEPSTS SSTIGSSNTD  180
PLWIVEPGES KSSFASYPPF HSSFETTSER SNGSLDGFGG NMNVQMDSLS NANVLANIFT  240
DTDSILQFKR GMEEASKFLP ASNQLVIDLD QYSLPPKTEE LPRDTLIKAE NIERDSSHNS  300
SRGRKHHHLE DDEFEEERSS KQSAVYVEEE LSELFDKVLL CNPNECALTN RPPPSEVDKG  360
VPNSGKSRSK KLGATNEAVD LRTLLISCAQ SVAADDRRTA NEQLKQIRQH SSPNGDANQR  420
LANVFANGLE ARLAGTGTRL YAALAPKRIT AFEKLKAYQA YMSACPFKKI AMMFANKMIY  480
KISLGAPTLH VIDFGILYGF QWPILIQHLS SRPGGPPKLR VTGIDLPQPG FRPAEMIEET  540
GRRLGKYCER FGVPFEYNAI ATQNWETIKI EDLKLVSGEV VAVNCLYRFK NLLDETVAVD  600
SPRDAVLSLI RKINPSIFVH AVINGSYSAP FFVTRFREAL FHFSALFDMF DATIPRDDQH  660
RFHFEQEFYG RETLNVIACE GVERVERAET YKQWQVRTMR AGFKLLPLNP ELMTKLSEKK  720
GAGYHRDFLF DEDGKWMLQG WKGRLICASS CWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein