PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199023.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 591aa    MW: 67423.5 Da    PI: 5.8303
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.45.7e-1071955731374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLle A a ++ d + a++ L+ +++++sp+gd+ +R a+yf++ L+arla++++ely +++ ++   ++ +e+l+a+++++ ++P+ k+s+
  XP_019199023.1 195 LRSLLLESAVAAANYDGRTATHRLNLIRQHSSPHGDAAERTAHYFANSLEARLAGTGPELYTSFSRRRR--MSAAEVLKAYQAYVTACPFKKMSN 287
                     6899*********************************************************88766655..579********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN++I + + +++++HiiDf+i +G+QWp+++q ++ Rp+gpp+l iTg++ p++g   +e++e tg+rLa+++++++vpfe+++ +ak++++
  XP_019199023.1 288 IFANKTIGKLTGKATAIHIIDFGILYGFQWPCFIQGISLRPSGPPKLHITGIDFPQPGfrPAERVEDTGRRLANYCKRFNVPFEYTA-IAKKWDT 381
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkp.....gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     ++l+eL++++     +E+l+Vn+ ++l++++de++ l++ +rd+vL+l+++++P+ +++   +  +ns+ F  rf eal ++s+lfd++e+++pr
  XP_019199023.1 382 ISLDELNMDRdrdreEEVLIVNCLYRLKNTPDETLILDNsPRDTVLNLINQINPDFFIHGVINGTYNSSFFTSRFKEALFHFSSLFDMFESTIPR 476
                     ******9999999999********************9998******************************************************* PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                     e++er ++E+e+ gr+i+n+vaceg+er+er et+++W+ r ++aGFk+v l++++ k++++ +r  + + + v+e+s+++++gWk+r L ++S+
  XP_019199023.1 477 EDQERLVYEEEIWGRDIMNIVACEGTERVERPETYKQWQLRNQRAGFKQVGLNQDVIKEVRAKVRLRYHKDFLVDEHSDWMLQGWKGRVLCALSC 571
                     ********************************************************************888************************ PP

            GRAS 373 Wr 374
                     W+
  XP_019199023.1 572 WT 573
                     *6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    
MDRFDSGDDD GSNYNHQFTS SSSSSSSGDV SIESSSCGGD DSTPLERDYF DGVLKYINQM  60
LMEEEDLENR PCMLQDSLAL QAAEKSFYEA LTDCNFSETN RKRDSYGDGD LEAGRDSKQV  120
AGSTAEEPEQ TEMYDKTLLC SANNPGFYSD PPWCHLDHST EQKRRFKPVN DVRSRRGRPR  180
AGENRVIGPG KPVDLRSLLL ESAVAAANYD GRTATHRLNL IRQHSSPHGD AAERTAHYFA  240
NSLEARLAGT GPELYTSFSR RRRMSAAEVL KAYQAYVTAC PFKKMSNIFA NKTIGKLTGK  300
ATAIHIIDFG ILYGFQWPCF IQGISLRPSG PPKLHITGID FPQPGFRPAE RVEDTGRRLA  360
NYCKRFNVPF EYTAIAKKWD TISLDELNMD RDRDREEEVL IVNCLYRLKN TPDETLILDN  420
SPRDTVLNLI NQINPDFFIH GVINGTYNSS FFTSRFKEAL FHFSSLFDMF ESTIPREDQE  480
RLVYEEEIWG RDIMNIVACE GTERVERPET YKQWQLRNQR AGFKQVGLNQ DVIKEVRAKV  540
RLRYHKDFLV DEHSDWMLQG WKGRVLCALS CWTPVEKAMT GSEFVRSDLR I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-171GRAS family protein