PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198873.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 306aa    MW: 33468 Da    PI: 6.4521
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.91.1e-16227263135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  XP_019198873.1 227 CRHCGISEkvTPMMRRGPEGPRTLCNACGLMWANKGT 263
                     **********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MEGIGGSEDG VMQQHPQVHY LPEHDDHHHH GFMSNGNVMD HDEHDDNGGG NGGSGDSECM  60
EGDVAAADPG NLSDNHGPIV VHGGNESSNQ LTLSFQGQVY VFDSVSPDKV QAVLLLLGGR  120
EVPPTTPMPI TNHNYRGLPT APQKLNVPQR LASLIRFREK RKERNFEKKI RYTVRKEVAL  180
RMQRNKGQFT SSKPTQDESA TASNWDSSQG WGTNGGGSQI QNQEIFCRHC GISEKVTPMM  240
RRGPEGPRTL CNACGLMWAN KGTLRDLSKT VVPPLGHSTS LHRSEENGNV EASQMIRGTE  300
NGDDSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-87GATA family protein