PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198497.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 377aa    MW: 41572.4 Da    PI: 7.1164
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.37.3e-101113773374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +++ e+A+a+++g++e+a+++L+rl + a+ +g++ qRl+ay+t AL++r++     +    p+se +   ++e+ ++++ ++e+sP++k+++++
  XP_019198497.1  11 QAISEAATAIAEGKNEAASEILSRLAQVANVKGTSQQRLTAYMTSALRSRVSP----VEYPPPVSELH---TKEHHFSTHKLYEASPCFKLGFMA 98 
                     67889***********************************************9....44334444444...7888888899************** PP

            GRAS  98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aN aIl av+ +   ++H+iDfdi+ G+ ++ Ll aLa+R+ e+p  l+iT++++  +g  ++l++++e L+k A++ gv +++nv+ ++++ +l
  XP_019198497.1  99 ANLAILHAVSDQrfCKLHVIDFDIGDGGRYLHLLYALAARKpENPTVLKITTFAD-VPGGDQQLRAVEEELQKQAQTAGVCLSINVMPCSDI-EL 191
                     ***********966678*********************98868888*********.8889**************************755555.57 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e+L+v+p+Eal+Vn++++l++l+de+v++e++rde+L+ vk lsP+vv+vveqe++ n+++F++r+ ea+ yy alfdsl++++pre++ r+ 
  XP_019198497.1 192 SRERLSVDPDEALVVNFAFNLYKLPDENVATENRRDELLRRVKALSPTVVTVVEQELNGNTAPFVARVNEACGYYGALFDSLDVTIPRENNFRVR 286
                     79********************************************************************************************* PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+  lgr+  n +aceg++r+er+e l+kWr+rl++aGF+++p+s+++ ++ ++ l+     + g+++ e+   + +gW++++L ++SaWr
  XP_019198497.1 287 IEEG-LGRKMGNSIACEGRDRVERCEVLGKWRARLSMAGFTAMPMSQQIPDSLRSKLNSGTrgNPGFTITEQVRGIGFGWMGQTLAVTSAWR 377
                     ****.************************************************9999876556899*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MECPAITCPK QAISEAATAI AEGKNEAASE ILSRLAQVAN VKGTSQQRLT AYMTSALRSR  60
VSPVEYPPPV SELHTKEHHF STHKLYEASP CFKLGFMAAN LAILHAVSDQ RFCKLHVIDF  120
DIGDGGRYLH LLYALAARKP ENPTVLKITT FADVPGGDQQ LRAVEEELQK QAQTAGVCLS  180
INVMPCSDIE LSRERLSVDP DEALVVNFAF NLYKLPDENV ATENRRDELL RRVKALSPTV  240
VTVVEQELNG NTAPFVARVN EACGYYGALF DSLDVTIPRE NNFRVRIEEG LGRKMGNSIA  300
CEGRDRVERC EVLGKWRARL SMAGFTAMPM SQQIPDSLRS KLNSGTRGNP GFTITEQVRG  360
IGFGWMGQTL AVTSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-122GRAS family protein