PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198418.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 345aa    MW: 40343.2 Da    PI: 8.7367
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.41.8e-2135127190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+eYAke+GF+vr  +++++ r g++  + + Cs+eg+++e+k+     +ek+rr+r+++r+gCka+++++k ++g ++v+ ++l H+H l+
  XP_019198418.1  35 EFYEEYAKEAGFDVRHGTKRRN-RFGQVSIKYMLCSREGYKAERKEPnnssKEKQRRRRVSNRIGCKARMVMTKCDEGGYKVHAIQLRHTHCLC 127
                     6*****************9999.66669999999********999888888999999**********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MEIHKDGSKY WIPPTTKEKT PFEGQRFETV ENGIEFYEEY AKEAGFDVRH GTKRRNRFGQ  60
VSIKYMLCSR EGYKAERKEP NNSSKEKQRR RRVSNRIGCK ARMVMTKCDE GGYKVHAIQL  120
RHTHCLCSDA AKPFLKINRQ LDIGHKTFLT HCAKANIGPT KAFRLFKEMV GTFTDVGATC  180
IDFCNFRRDL LAYISEADAQ MVIEDMFKRK EDNPDFYFDF DIDEEAQLTR LFWADAECRR  240
NYAYYGDVMS FDATYSTNRY KLVFVPFTGV DNHKRCITFG AGLISKEDVE SYEWLLMKFK  300
TAMEYTPRCA TTDQDPALKI VVPQIMPTTR HRFCMWHIMA KVGEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-53FAR1 family protein