PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198292.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 492aa MW: 55656.2 Da PI: 8.0054

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.8e-20	57	143	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yne+A++vGFsvrk k++++ +++i +++f+Csk g++ + + + ++ trtgC a ++ dg w v+k + HnHel+ XP_019198292.1 57 LYNEHAYRVGFSVRKGKQRYKASTKTIQMKRFYCSKAGFKCKADGG--VKLYSKIDTRTGCGAFVQFDVGGDGLWTVAKHMKVHNHELC 143 7*************************************999988..88899*********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MDEATNQSEL NVDRYSMMEV RVNEDLVGDS LSTDQGDLNI DGSSSIPVSN GDEAFELYNE 60 HAYRVGFSVR KGKQRYKAST KTIQMKRFYC SKAGFKCKAD GGVKLYSKID TRTGCGAFVQ 120 FDVGGDGLWT VAKHMKVHNH ELCDLDKSHL LRSHRRAGSN QLSCLKVLKQ SGVGVPGGIR 180 FLKHQSGGSS LVGFTSPDAY NSLACDTVKS LDGTDSNYLI EIFRRRQSNE MVTEFKCHKN 240 SWLGKLYDCR EKWCPAFNKD YFSGGILSSQ RSETTNHSIS RRLSKNAGLC DFYSSFVGVI 300 SEWRSKENGE DFRCAQGVPA MMIDHVKLLS HAREVYTIEI YFLFEEQLMK GSACHQEIVL 360 NDGCQYKYHV WRPDVDIIRH EVSFKRINLD ISCSCKLFSE MGILCCHCLR ILDINCVPSI 420 PDKYIMKRWT KKVAAGRNVN FDSLSYNVGV PHSIWVVEIS RKFQKLVVSS QDNSVARQFC 480 DEAVENACKE ID

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MDEATNQSEL NVDRYSMMEV RVNEDLVGDS LSTDQGDLNI DGSSSIPVSN GDEAFELYNE  60
HAYRVGFSVR KGKQRYKAST KTIQMKRFYC SKAGFKCKAD GGVKLYSKID TRTGCGAFVQ  120
FDVGGDGLWT VAKHMKVHNH ELCDLDKSHL LRSHRRAGSN QLSCLKVLKQ SGVGVPGGIR  180
FLKHQSGGSS LVGFTSPDAY NSLACDTVKS LDGTDSNYLI EIFRRRQSNE MVTEFKCHKN  240
SWLGKLYDCR EKWCPAFNKD YFSGGILSSQ RSETTNHSIS RRLSKNAGLC DFYSSFVGVI  300
SEWRSKENGE DFRCAQGVPA MMIDHVKLLS HAREVYTIEI YFLFEEQLMK GSACHQEIVL  360
NDGCQYKYHV WRPDVDIIRH EVSFKRINLD ISCSCKLFSE MGILCCHCLR ILDINCVPSI  420
PDKYIMKRWT KKVAAGRNVN FDSLSYNVGV PHSIWVVEIS RKFQKLVVSS QDNSVARQFC  480
DEAVENACKE ID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-23	FAR1 family protein