PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019198082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 119aa MW: 13418.4 Da PI: 8.1078 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.8 | 2.1e-39 | 6 | 106 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC+ lr++C++dC++ pyfp ++p++fa+vhk+FGa+n +k+lk+++e +r d+++sl+yeA++r++dPvyG+vg+i+ lqq++ + +++la XP_019198082.1 6 RCAACRQLRKRCTSDCIFLPYFPPNDPQRFAVVHKIFGANNASKMLKQVEEYKRGDVAESLYYEAQCRVEDPVYGCVGIITLLQQEIYNFESQLA 100 6********************************************************************************************** PP DUF260 96 llkeel 101 ++++++ XP_019198082.1 101 KIEAQI 106 998875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence |
MATGSRCAAC RQLRKRCTSD CIFLPYFPPN DPQRFAVVHK IFGANNASKM LKQVEEYKRG 60 DVAESLYYEA QCRVEDPVYG CVGIITLLQQ EIYNFESQLA KIEAQIQLLK AQGVATPSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 8e-46 | LBD family protein |