PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197988.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 405aa MW: 45303 Da PI: 6.0996

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.5	9.3e-08	341	374	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_019197988.1 341 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 374 469*****************************87 PP
2	ELK	27.6	6.6e-10	295	316	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_019197988.1 295 ELKHELKHGYKEKIVDIREEIL 316 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MAFQDHFSQE MALQQQQQQQ QQQNAVVLHS MLPADHHSSS PKSPPSTWLN TSLLRQHSHH 60 FSAPADASAA AAAAGTSFLH LQTTNSDSST SNHWLSPTGE GPKSDAVSEP MNNSNNNANN 120 SEESSWEREK CKADILNHPL YDQLLSAHVS CLRIATPVDQ LPRIDAQLDQ SQNVVAKYSV 180 LGQGQQPLDD KDLDQFMTHY VLLLSSFKEQ LQQHVRVHAM EAVMACWELE QSLQSLTGVA 240 PGEGTGATMS DDDDEQADSD ANFFDGGLDG SDTMGFGPLV PTESERSLME RVRQELKHEL 300 KHGYKEKIVD IREEILRKRR AGKLPGDTTS VLKAWWQSHS KWPYPTEEDK ARLVQETGLQ 360 LKQINNWFIN QRKRNWHSNP SSSTSQKSKR KSGSAGEKMS SEHFI

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MAFQDHFSQE MALQQQQQQQ QQQNAVVLHS MLPADHHSSS PKSPPSTWLN TSLLRQHSHH  60
FSAPADASAA AAAAGTSFLH LQTTNSDSST SNHWLSPTGE GPKSDAVSEP MNNSNNNANN  120
SEESSWEREK CKADILNHPL YDQLLSAHVS CLRIATPVDQ LPRIDAQLDQ SQNVVAKYSV  180
LGQGQQPLDD KDLDQFMTHY VLLLSSFKEQ LQQHVRVHAM EAVMACWELE QSLQSLTGVA  240
PGEGTGATMS DDDDEQADSD ANFFDGGLDG SDTMGFGPLV PTESERSLME RVRQELKHEL  300
KHGYKEKIVD IREEILRKRR AGKLPGDTTS VLKAWWQSHS KWPYPTEEDK ARLVQETGLQ  360
LKQINNWFIN QRKRNWHSNP SSSTSQKSKR KSGSAGEKMS SEHFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	1e-151	TALE family protein