PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197965.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 640aa MW: 70415.1 Da PI: 5.6

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.3	8.6e-29	197	250	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv++v+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl XP_019197965.1 197 KPRVVWSVELHRKFVDVVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 250 79*****************.******************************8 PP
2	Myb_DNA-binding	39.4	1.4e-12	199	249	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ ++vd+v+qlG + +k+I m+ +g+t++++ s++qky+ XP_019197965.1 199 RVVWSVELHRKFVDVVNQLGIEkaVPKRILDLMNvEGLTRENVASHLQKYR 249 678***********************************************7 PP
3	Response_reg	78.4	2.4e-26	25	133	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ ++ll+ +l+k +y +v+++ +++ ale+l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++ +++ + + G XP_019197965.1 25 VLAVDDDPISLKLLECLLRKCQY-HVTVTNQARMALEMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTSLVMKGVTHG 117 799******************.***********888889***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l+Kp+ +eel++ XP_019197965.1 118 ACDYLVKPVRIEELRN 133 ************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MTVDESREMV EKENYSDNFP VGMRVLAVDD DPISLKLLEC LLRKCQYHVT VTNQARMALE 60 MLRENKDRFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSANSDTSLV MKGVTHGACD 120 YLVKPVRIEE LRNVWQHVIR KKKVDPKLHS KSGEEGRPGD QLSGTVEQNE KLNKRRKDEE 180 DGSVDRCENE DPGTQKKPRV VWSVELHRKF VDVVNQLGIE KAVPKRILDL MNVEGLTREN 240 VASHLQKYRL YLRRISLVST PQDNMATPYM RMGSLDGFGD LPTLAGPEQL NRATLPSYAP 300 GSMLGRLNSS AGVSLQNVNP LGLLQPSHAQ GSRHSLDPLG KLNSNAPPTS QNPSLFLGIP 360 SLELDQLRHG KFTKIEPDLN PLDNSKLLAA ASTFTGSGSG FGNPINAAIL QGNSGFGNPH 420 SLNMTSLRPE PLNTGVISSS SNFLGHGGLN GNLQNSILAS NVYPLMDQNH VRGNYSFVGP 480 HLQSSPLVYP LMENSRGQTQ YQEGFIGDAI QTVNQAPTQF WGDHEQNHNS NNVFSNPSSQ 540 ILGTGLMPSL TQIADQNNDV FNMKTNTSLI GQENGGSVVL FQPNVNENFS QDSRMGSNGD 600 YMLNSAKAQG AYASLDDLMN GVINEEQNGQ FGFNDYSFGP

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MTVDESREMV EKENYSDNFP VGMRVLAVDD DPISLKLLEC LLRKCQYHVT VTNQARMALE  60
MLRENKDRFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSANSDTSLV MKGVTHGACD  120
YLVKPVRIEE LRNVWQHVIR KKKVDPKLHS KSGEEGRPGD QLSGTVEQNE KLNKRRKDEE  180
DGSVDRCENE DPGTQKKPRV VWSVELHRKF VDVVNQLGIE KAVPKRILDL MNVEGLTREN  240
VASHLQKYRL YLRRISLVST PQDNMATPYM RMGSLDGFGD LPTLAGPEQL NRATLPSYAP  300
GSMLGRLNSS AGVSLQNVNP LGLLQPSHAQ GSRHSLDPLG KLNSNAPPTS QNPSLFLGIP  360
SLELDQLRHG KFTKIEPDLN PLDNSKLLAA ASTFTGSGSG FGNPINAAIL QGNSGFGNPH  420
SLNMTSLRPE PLNTGVISSS SNFLGHGGLN GNLQNSILAS NVYPLMDQNH VRGNYSFVGP  480
HLQSSPLVYP LMENSRGQTQ YQEGFIGDAI QTVNQAPTQF WGDHEQNHNS NNVFSNPSSQ  540
ILGTGLMPSL TQIADQNNDV FNMKTNTSLI GQENGGSVVL FQPNVNENFS QDSRMGSNGD  600
YMLNSAKAQG AYASLDDLMN GVINEEQNGQ FGFNDYSFGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-116	ARR-B family protein