PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197559.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 463aa MW: 49859.6 Da PI: 9.3851

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019197559.1 90 FVCEICNKGFQRDQNLQLHRRGH 112 89*******************88 PP
2	zf-C2H2	15.8	4.1e-05	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ XP_019197559.1 166 WKCDKCSKKYAVQSDWKAHQKTC 188 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MSNITGEDGS FSSGNTGEEV HQQQQHQQKH LQSPNPTPPA TVTPTNSNGS TSQQQQQPPA 60 KKKRNLPGTP DPNAEVVALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ 120 RTTAEVRKRV YICPEPTCVH HNPARALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD 180 WKAHQKTCGT REYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQAGGL MDPNDLQTQI 240 PELMSANTVM GLSEFNNFDP KNPLKSLPQD LVPIPFKSIN MAGAGGGMFA TSSGNLFGSP 300 RSIASSSSGL QLSSNTPSPG FNGSSAVPMS ATALLQKAAQ MGATASNSIN SPMMQKSFAS 360 SMAGTDHRTS TQPPPYGALE QQSSISPTAA FENFPTPAAE GGFSATMNDI AIYTGMLMNT 420 TNTSNEQNPS AERYDDGGFL GGRRAKAAGG GGRNEYASAA AKQ

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MSNITGEDGS FSSGNTGEEV HQQQQHQQKH LQSPNPTPPA TVTPTNSNGS TSQQQQQPPA  60
KKKRNLPGTP DPNAEVVALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ  120
RTTAEVRKRV YICPEPTCVH HNPARALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD  180
WKAHQKTCGT REYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQAGGL MDPNDLQTQI  240
PELMSANTVM GLSEFNNFDP KNPLKSLPQD LVPIPFKSIN MAGAGGGMFA TSSGNLFGSP  300
RSIASSSSGL QLSSNTPSPG FNGSSAVPMS ATALLQKAAQ MGATASNSIN SPMMQKSFAS  360
SMAGTDHRTS TQPPPYGALE QQSSISPTAA FENFPTPAAE GGFSATMNDI AIYTGMLMNT  420
TNTSNEQNPS AERYDDGGFL GGRRAKAAGG GGRNEYASAA AKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-102	C2H2 family protein