PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197518.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 329aa MW: 37523.9 Da PI: 6.6692

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	193	218	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ XP_019197518.1 193 YQPDICKDYKETGYCGYGDSCKFMHD 218 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MAEEPEKANS EDPQQTVCSF FRKPSKAKNI RKRTAIEEGE NEDGDPKDET SVVFNKKKPA 60 VADNKLHFST GPSKREMTSE SDADSKKPLF QFESSREIQV QTDNKATATL ETETEFSKDA 120 RAIRERVLKR AEEALKGKND NTADEKLYKG IHGYTDYKAG FRREHTISSE KAGGSHGPLR 180 ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQLEK EWDEAEKAKK 240 RRMEMGMLDD EESAEQSDDD DDDALPFACF ICRQPFVDPV MTKCKHYFCE HCALKHHAKN 300 KKCFVCNQPT LGIFNTAFEI RKKMAAEGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-158	C3H family protein