PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019197230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 324aa MW: 35979.9 Da PI: 5.5752 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117 | 1.1e-36 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++rr+C+ dC+lapyfpa+qp+ f+n+h+lFG+sn++k+lk++++++r am+s++ +A+ara+ PvyG+v+ i++l +++ +++el+ XP_019197230.1 10 ACASCKYQRRRCKVDCPLAPYFPADQPNMFQNAHRLFGVSNIIKILKQIDPSQRGVAMKSIIDQANARAKYPVYGCVAEIQQLMLKIQLAEEELQ 104 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_019197230.1 105 AVQAQL 110 *99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence |
MTRKGGTSQA CASCKYQRRR CKVDCPLAPY FPADQPNMFQ NAHRLFGVSN IIKILKQIDP 60 SQRGVAMKSI IDQANARAKY PVYGCVAEIQ QLMLKIQLAE EELQAVQAQL AFYRQHNQQQ 120 QQQQQEISST GPGPTTDSVL PLQLGTLPPP LPISPPTNAP GFSLFHQDPP PQYCNAAAFP 180 VSHPSSYSNA AYNTSNATTY VNSKDNNNIN SLWIQQHFTN SNSNTNNNNN NNNTVNPMMM 240 QPQMGSGTAQ PITIQQQEEN IQDYDEIHPF FDTIDDRQSY IDSKEAYESS SESSLKDIAQ 300 SVEHVSENEL KSAAACFSLT SVNL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-47 | LBD family protein |