PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019197230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 324aa    MW: 35979.9 Da    PI: 5.5752
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019197230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601171.1e-36101101101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCa+Ck++rr+C+ dC+lapyfpa+qp+ f+n+h+lFG+sn++k+lk++++++r  am+s++ +A+ara+ PvyG+v+ i++l  +++ +++el+
  XP_019197230.1  10 ACASCKYQRRRCKVDCPLAPYFPADQPNMFQNAHRLFGVSNIIKILKQIDPSQRGVAMKSIIDQANARAKYPVYGCVAEIQQLMLKIQLAEEELQ 104
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     +++++l
  XP_019197230.1 105 AVQAQL 110
                     *99885 PP

Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MTRKGGTSQA CASCKYQRRR CKVDCPLAPY FPADQPNMFQ NAHRLFGVSN IIKILKQIDP  60
SQRGVAMKSI IDQANARAKY PVYGCVAEIQ QLMLKIQLAE EELQAVQAQL AFYRQHNQQQ  120
QQQQQEISST GPGPTTDSVL PLQLGTLPPP LPISPPTNAP GFSLFHQDPP PQYCNAAAFP  180
VSHPSSYSNA AYNTSNATTY VNSKDNNNIN SLWIQQHFTN SNSNTNNNNN NNNTVNPMMM  240
QPQMGSGTAQ PITIQQQEEN IQDYDEIHPF FDTIDDRQSY IDSKEAYESS SESSLKDIAQ  300
SVEHVSENEL KSAAACFSLT SVNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-47LBD family protein