PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197079.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 682aa MW: 76094.3 Da PI: 8.4395

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.2	1.8e-20	70	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++Y++ GF++r s+ k+ r g i++r +vCs++g + ++ ++k+rr+r+++r+gC+akl +k++++g+++vtk++++H XP_019197079.1 70 EFYKNYGRVGGFDIRHSSVKRD-RAGAIIRRSLVCSRQGAKGGGRRVptvvvnvtssSNKQRRRRVSNRVGCNAKLGLKENSTGEFVVTKFVEDH 163 6**************99998.7888*********999888799***9999******************************* PP FAR1 86 nHela 90 +H+l+ XP_019197079.1 164 THSLC 168 **8 PP

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence
MEIHGDGTPT AGAAEHYPTG SIDGDSSTRD VTHYTPGPTT GLKQHWKPTV DTKIIPVRGQ 60 RFKSLSEGIE FYKNYGRVGG FDIRHSSVKR DRAGAIIRRS LVCSRQGAKG GGRRVPTVVV 120 NVTSSSNKQR RRRVSNRVGC NAKLGLKENS TGEFVVTKFV EDHTHSLCSE GAKLFMWGNR 180 KLNVAQQAFL ANCFKANVGA STGMRLCREV AGSFENVGAM YVEFHNFKRD LQAYVDEVDG 240 ELIIERFKTK LEVCDSFFYD YHLDEENRLA RLFWADPISR RSFSCYGDVI SFDATYSTNR 300 YNLVFIPFTG VDNHKRCITV AAGLLNKEDV ESYSWLLERF IHAMGNAPLC VVTDHDPAMK 360 IAIRQVLPGC SHRYCMWHIM TKVGEKVGPE LSNNEVFRKS LNDIVWSETT STDSPLSGLV 420 RTTSRSEAQN NVYGKFTSLH SSLVEFYMQF ESVLETQRHN QAKLDTQCEG SLPDFKTPLA 480 LERRAADLFT LSTFYTLQEE IEAACFYCEV VGIREDGGNI YYTIKGDGTT TYTYVVDRWC 540 KHLGCNACRG QHVDGAPPIS GATELWSEIN TCVGMVGEST VRQARMVQVL KELRDEFASD 600 CEIIGAAKSN RATIEAFCGV QPPPCITIKP LAQAKNKGSG KRIKSNRDIA IEKSVKVGRK 660 CGVCGEYARH NARSCPSKQR VV

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence

MEIHGDGTPT AGAAEHYPTG SIDGDSSTRD VTHYTPGPTT GLKQHWKPTV DTKIIPVRGQ  60
RFKSLSEGIE FYKNYGRVGG FDIRHSSVKR DRAGAIIRRS LVCSRQGAKG GGRRVPTVVV  120
NVTSSSNKQR RRRVSNRVGC NAKLGLKENS TGEFVVTKFV EDHTHSLCSE GAKLFMWGNR  180
KLNVAQQAFL ANCFKANVGA STGMRLCREV AGSFENVGAM YVEFHNFKRD LQAYVDEVDG  240
ELIIERFKTK LEVCDSFFYD YHLDEENRLA RLFWADPISR RSFSCYGDVI SFDATYSTNR  300
YNLVFIPFTG VDNHKRCITV AAGLLNKEDV ESYSWLLERF IHAMGNAPLC VVTDHDPAMK  360
IAIRQVLPGC SHRYCMWHIM TKVGEKVGPE LSNNEVFRKS LNDIVWSETT STDSPLSGLV  420
RTTSRSEAQN NVYGKFTSLH SSLVEFYMQF ESVLETQRHN QAKLDTQCEG SLPDFKTPLA  480
LERRAADLFT LSTFYTLQEE IEAACFYCEV VGIREDGGNI YYTIKGDGTT TYTYVVDRWC  540
KHLGCNACRG QHVDGAPPIS GATELWSEIN TCVGMVGEST VRQARMVQVL KELRDEFASD  600
CEIIGAAKSN RATIEAFCGV QPPPCITIKP LAQAKNKGSG KRIKSNRDIA IEKSVKVGRK  660
CGVCGEYARH NARSCPSKQR VV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-57	FAR1 family protein