PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196828.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 508aa MW: 54851.4 Da PI: 9.3179

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019196828.1 94 FVCEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP
2	zf-C2H2	12.7	0.00038	171	193	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_019196828.1 171 WKCDKCSKRYAVQSDWKAHSKTC 193 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MMMKGVMIHQ PNLDNQENMS NVTSAASGEA SVSSSNGGVY PHQQHYFGGN TINQPQPQPQ 60 PQQIKKKRNQ PGNPDPDSEV IALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW 120 KLKQRSSKDV VRKKVYVCPE TNCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY 180 AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI TGNNNNNNNA 240 FHHHHLNSQP RSSSAPLSNN ISLHFQPPQF TADFSAVKKE QTNTAAAGGF NLRPEIPPWL 300 LPGGGSPHPQ PQPPPPPPPI DMTHSIFQEF GGGGLPGFHS AVGSPHISAT ALLQKAAQMG 360 ATMTGSGGPT TLVMSGPHLA HVSSDQPDFG LNLSSRGAGG LLDGLASFGG KATVSAAAPS 420 ASAAPSASFL HDMMNSFSSN NPPFEDPLFG SFFNNKKDAG AGAGVVNDDI TKDFLGLRPL 480 SRTDIFNITG GLVNSPADQS QKTWQQSS

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MMMKGVMIHQ PNLDNQENMS NVTSAASGEA SVSSSNGGVY PHQQHYFGGN TINQPQPQPQ  60
PQQIKKKRNQ PGNPDPDSEV IALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW  120
KLKQRSSKDV VRKKVYVCPE TNCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY  180
AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI TGNNNNNNNA  240
FHHHHLNSQP RSSSAPLSNN ISLHFQPPQF TADFSAVKKE QTNTAAAGGF NLRPEIPPWL  300
LPGGGSPHPQ PQPPPPPPPI DMTHSIFQEF GGGGLPGFHS AVGSPHISAT ALLQKAAQMG  360
ATMTGSGGPT TLVMSGPHLA HVSSDQPDFG LNLSSRGAGG LLDGLASFGG KATVSAAAPS  420
ASAAPSASFL HDMMNSFSSN NPPFEDPLFG SFFNNKKDAG AGAGVVNDDI TKDFLGLRPL  480
SRTDIFNITG GLVNSPADQS QKTWQQSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	134	KLKQRSSKDVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-114	C2H2 family protein