PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196760.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 577aa    MW: 64275.6 Da    PI: 6.2419
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.91.3e-1292085762373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL+ecA+a++++++ + ++l+++ +  +s +gdp+qRl ay+ e+L ar   s++++y++l+++e +     + l+++++++e++P+lkf+++
  XP_019196760.1 208 KQLLIECARALDENKMLEFERLIEQARCAVSISGDPIQRLGAYMIEGLVARKEASGTNIYRTLKCKEPA---GNDLLSYMHILYEICPYLKFGYM 299
                     799*****************************************************************9...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI e+  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s   + + l ++g+rLa + e++++p+efn+ v     ++
  XP_019196760.1 300 AANGAIAESCRNEDRIHIIDFQICQGTQWMTLLQALAARPGGAPYVRITGIDDPLSRhaRGDGLVAVGKRLAAISEKFNIPVEFNP-VPVFAPQV 393
                     *****************************************************98888899*************************.6888999* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkvv++veqe+++n+++F+ rf+ealeyysa+f+sl++ lpr+ +eri+
  XP_019196760.1 394 TREMLDIRPGEALAVNFPLQLHHTPDESVDVSNPRDGLLRMVKSLSPKVVTLVEQESNTNTAPFFSRFIEALEYYSAMFESLDVVLPRDRKERIN 488
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF+++pls+++++ +k ll+ ++ + y++ e++g+++lgWkdr+L+s+SaW
  XP_019196760.1 489 VEQHCLARDIVNVIACEGKERVERHELLGKWKSRFTMAGFQQYPLSSYVNSVIKGLLKCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 576
                     *********************************************************9998.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    
MDSHQFIAYG ADLSFSSFPQ TSSSVPATLF DSLKFDSRSS PNSPFSNCFD PQTPLSDSQE  60
LYSSTDNLSG ASPSSNSSLD YNSYPQRCSP ASDCLPESLV LPSGEYTFLR NANHNQKMKH  120
VLWQLESALM GPDGVGATNS EGENTQKQTS SQGSIRSWSQ EAQGSGRYES QQFHQSSFGK  180
SGEGIHSEKR HKIMLDFPSQ GVPPVNIKQL LIECARALDE NKMLEFERLI EQARCAVSIS  240
GDPIQRLGAY MIEGLVARKE ASGTNIYRTL KCKEPAGNDL LSYMHILYEI CPYLKFGYMA  300
ANGAIAESCR NEDRIHIIDF QICQGTQWMT LLQALAARPG GAPYVRITGI DDPLSRHARG  360
DGLVAVGKRL AAISEKFNIP VEFNPVPVFA PQVTREMLDI RPGEALAVNF PLQLHHTPDE  420
SVDVSNPRDG LLRMVKSLSP KVVTLVEQES NTNTAPFFSR FIEALEYYSA MFESLDVVLP  480
RDRKERINVE QHCLARDIVN VIACEGKERV ERHELLGKWK SRFTMAGFQQ YPLSSYVNSV  540
IKGLLKCYSE HYTLVEKDGA MLLGWKDRNL ISASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-177GRAS family protein