PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019196602.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ARF | ||||||||
Protein Properties | Length: 680aa MW: 75725.6 Da PI: 6.0286 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.6 | 3.3e-25 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ + ++ + t+ ++d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF+ +++ XP_019196602.1 128 FAKTLTQSDANNGGGFSVPRYCAETIfplldfsDDPPVQ--TIFVKDVHGETWQFRHIYRGTPRRHLLTTGWSNFVNRKKLIAGDSIVFM--RKE 218 89*****************************96555555..8************************************************..447 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ +v+++r+ XP_019196602.1 219 NGDIHVGIRRA 229 8888****997 PP | |||||||
2 | Auxin_resp | 101.3 | 1.3e-33 | 296 | 379 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+t+++Fev+Y+P ast+eFvv+++ v++a+++k+++GmR+km etedss++++ +Gtv++v++ dp++Wp+S+W +L+ XP_019196602.1 296 AALLAATGQPFEVLYYPLASTPEFVVSASTVRDAMRIKWCPGMRVKMPSETEDSSRISWfMGTVSSVEAEDPIKWPDSPWHLLQ 379 567899***************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence |
MINAMNTVDN FMNETEKTEK LVDSQLWHAC AGRMVQMPEV NSKVFYFPQG HAEHFKRSVD 60 FAICGRIPPL ILSRVSAVRY LADSETDEVY AKIGLVPLGG SGEHDVYDDG GGFLGVVKYK 120 GEEKPNSFAK TLTQSDANNG GGFSVPRYCA ETIFPLLDFS DDPPVQTIFV KDVHGETWQF 180 RHIYRGTPRR HLLTTGWSNF VNRKKLIAGD SIVFMRKENG DIHVGIRRAR RRIGRGPEAF 240 SRWHTGTGSY VTSLNRAFSG NFSEGDEKFV QNDRTENCGV GTRGRSDVLI ESVTEAALLA 300 ATGQPFEVLY YPLASTPEFV VSASTVRDAM RIKWCPGMRV KMPSETEDSS RISWFMGTVS 360 SVEAEDPIKW PDSPWHLLQV AWDEPDLLQN IKRVSPWLVE LATDVCPVLQ PHLSPPRKKF 420 RLPQPLPLVR QLPAPSLLCN PVIPSSLLSC VSDNIPTGIQ GARHAQCGLS SKDLHFNKMN 480 SELFPFGFRE AESTILPKTL TGNVMDSSEN EENFSCLLTM GNNSPNLEKN NEEKIPAFML 540 FGKPIFAEQQ MPNSCSGETI GKSLSNSNQE KTRNLLDSPG SAVLQNGPLD NSSDGVFPFY 600 KTQKSEPGFG TGHCEVFIAS EDVEQTLESS FSSFNELYKK LVDVIGIEKT EKFNSALYQD 660 ATGAVKHTRD EPFSEFMKRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |