PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019196385.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 23151.4 Da PI: 5.2633 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.1 | 6.4e-43 | 53 | 152 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++l e++r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la XP_019196385.1 53 PCAACKILRRRCVDKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELGEDQRADAVNSIVYEAQARIRDPVYGCAGAICQLQKQISELQAQLA 147 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_019196385.1 148 KAQAE 152 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MEYTTGDMTA AASSLKTPFS PPSSSAASSP AAVSPTKTRS SSPVSSSVAV VSPCAACKIL 60 RRRCVDKCVL APYFPPTDPL KFTIAHRVFG ASNIIKMLQE LGEDQRADAV NSIVYEAQAR 120 IRDPVYGCAG AICQLQKQIS ELQAQLAKAQ AEIFNMQYQN ASLANLICLE TAAVAATTTA 180 SGIGIQEEQL PYFDNVGSFF LEDNCAALEP MLWTWK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-54 | LBD family protein |