PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196372.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 327aa MW: 35864.2 Da PI: 8.4755

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196372.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg++F++ L H +H XP_019196372.1 130 YECKTCGRTFPTFQALGGHRTSH 152 99**********99998888777 PP
2	zf-C2H2	14.4	0.00011	210	232	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_019196372.1 210 HECSYCGAEFSSGQALGGHMRRH 232 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MDALEEVAGD PNCTNQDLSH IVKGKRTKRS RSRPHSPISF TMITDTTPPH SSTTSEPIPA 60 APTPEDEDMA RCLMLLSQGG GVSRHPPAIP KSLLYKEEES GGGSKFCSKK YIETTTVGGG 120 GGVKVGMYVY ECKTCGRTFP TFQALGGHRT SHTKEKPPLT TVETAAVKRP LSLYDEEDIN 180 PYPFNKTPKI SPPFSSLHFY DSAKSSPRIH ECSYCGAEFS SGQALGGHMR RHRNSTAAAS 240 ASQLSPSSSS FEKRVLQKEE NNGKGLNLDL NLLPAGEDNQ DHRRARELPE NQEQQPPQLS 300 RVSFLTDFGT PVQRLAFQFA KDLTKRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	KRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-31	C2H2 family protein