PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196358.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 542aa    MW: 60127.2 Da    PI: 5.4539
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS249.11.8e-761565342374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL  cA a+++g+++++q+lL  lselas +gd+++Rlaa+ ++AL ++l + +s+ +    +++ ++++++    +l +f+++ P++++ + 
  XP_019196358.1 156 EQLLNPCAAAITAGNMNRVQHLLYVLSELASLTGDANHRLAAHGLQALTHHLGS-GSSFA---GVTTFASTTTKFFRESLMIFNDINPWFRIPNS 246
                     689*************************************************99.44443...3333333446777778889************* PP

            GRAS  97 taNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpf 176
                      aN+ Ilea+++e     +++Hi+D+++s+G+QWp+Ll++L+ Rp ++pp +R+T++ +   +            +      +L  fA+++++++
  XP_019196358.1 247 FANSSILEALAEEqqdrpRCLHILDIGVSHGIQWPTLLEELTHRPgGPPPLVRLTVITPTVDNhlsnttpflIPPSGYDFSPNLLGFAKAININL 341
                     **********99988888889************************55566*******99766578888888877888999*************** PP

            GRAS 177 efnvlvakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysa 266
                     ++n+l    l++l  ++++++ +++E l+V+ +++lh+l    ++ ++er+e+Lk+++sl Pk vv++e++a++   n ++F+++f++++ey + 
  XP_019196358.1 342 QINILDNLPLQNLgaHVHTIKSSQDEILIVCAQFRLHNLN---HHAPDERTELLKALRSLGPKRVVLSENNAECscsNCGDFAAGFSRKVEYLWR 433
                     ****96668888876899999999***************8...66677789******************99655337888*************** PP

            GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                     +++s+++ +    + r + Er++++ e+ +++ + g++    +e++ekW er++ +GF   +++e+a + a++llrk++ +++++vee++g++ l
  XP_019196358.1 434 FLESTSMAF----KGRWNEERRMMEGEAAKALINTGEM----NERKEKWCERMRGVGFAREEFGEDAIDGARMLLRKYDnNWEMKVEEKDGCVDL 520
                     *****9996....8888889999999999999999999....78888********************************9999************ PP

            GRAS 361 gWkdrpLvsvSaWr 374
                      Wk++pL ++S W+
  XP_019196358.1 521 WWKGQPLSFTSLWK 534
                     *************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MTIDEPAEPS PFPDQILEWF GGSNFSYDSS FLDCPYDSND HFFGDSDSWW DQGQSLEILH  60
KSDDNNNNGG VSTSLNSFSS VVTTAAAEVP VVLDHPAAQP PVDRKRKARD DGEAEVEVEQ  120
AAAPGRKGGG NRKGTNKAGG NGNSNNGGNK DGRWAEQLLN PCAAAITAGN MNRVQHLLYV  180
LSELASLTGD ANHRLAAHGL QALTHHLGSG SSFAGVTTFA STTTKFFRES LMIFNDINPW  240
FRIPNSFANS SILEALAEEQ QDRPRCLHIL DIGVSHGIQW PTLLEELTHR PGGPPPLVRL  300
TVITPTVDNH LSNTTPFLIP PSGYDFSPNL LGFAKAININ LQINILDNLP LQNLGAHVHT  360
IKSSQDEILI VCAQFRLHNL NHHAPDERTE LLKALRSLGP KRVVLSENNA ECSCSNCGDF  420
AAGFSRKVEY LWRFLESTSM AFKGRWNEER RMMEGEAAKA LINTGEMNER KEKWCERMRG  480
VGFAREEFGE DAIDGARMLL RKYDNNWEMK VEEKDGCVDL WWKGQPLSFT SLWKMDPNHA  540
FQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-138GRAS family protein