PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019196357.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 335aa MW: 37498.3 Da PI: 5.1662 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.4 | 3.9e-41 | 37 | 135 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++++l + e+++am+++++e+++ra dPv G++++i++lq+q+eq++ael+ XP_019196357.1 37 ACAACKYQRRKCASDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLTPPEKDEAMRTIIFESDVRAMDPVGGCYRIIRQLQRQIEQSQAELD 131 7*********************************************************************************************9 PP DUF260 96 llke 99 ++ + XP_019196357.1 132 VVLH 135 8766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence |
MNIINNINNN NNNNNISGKN NTNNNNIIVS RTNGSQACAA CKYQRRKCAS DCILAPYFPH 60 DRQRQFLNAH KLFGVSNITK IIRHLTPPEK DEAMRTIIFE SDVRAMDPVG GCYRIIRQLQ 120 RQIEQSQAEL DVVLHHLAYC RALAAGDSVS LPLPNNNNNN NNNNVNATHH HRDAAIDQTA 180 AAAAADVVAN NNNFGALRDE WYQQQPSNVN VNGYPGPHHY PHYPQPQQYL VVQNNGDHRD 240 DHQLPYQTNV AWEMQAPDTT PPSSVLPTSQ VSSQDNDACD SIKPILDLSG YVEDLNFGPE 300 ETLDESEEVL VKEQDKAGAL NEEEENISNM LKIMI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-46 | LBD family protein |