PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196357.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 335aa    MW: 37498.3 Da    PI: 5.1662
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.43.9e-4137135199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++++l + e+++am+++++e+++ra dPv G++++i++lq+q+eq++ael+
  XP_019196357.1  37 ACAACKYQRRKCASDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLTPPEKDEAMRTIIFESDVRAMDPVGGCYRIIRQLQRQIEQSQAELD 131
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++ +
  XP_019196357.1 132 VVLH 135
                     8766 PP

Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MNIINNINNN NNNNNISGKN NTNNNNIIVS RTNGSQACAA CKYQRRKCAS DCILAPYFPH  60
DRQRQFLNAH KLFGVSNITK IIRHLTPPEK DEAMRTIIFE SDVRAMDPVG GCYRIIRQLQ  120
RQIEQSQAEL DVVLHHLAYC RALAAGDSVS LPLPNNNNNN NNNNVNATHH HRDAAIDQTA  180
AAAAADVVAN NNNFGALRDE WYQQQPSNVN VNGYPGPHHY PHYPQPQQYL VVQNNGDHRD  240
DHQLPYQTNV AWEMQAPDTT PPSSVLPTSQ VSSQDNDACD SIKPILDLSG YVEDLNFGPE  300
ETLDESEEVL VKEQDKAGAL NEEEENISNM LKIMI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-46LBD family protein