PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019196308.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 112aa MW: 12373.1 Da PI: 9.4659 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.1 | 1.5e-20 | 15 | 58 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ienks +vtfskRr+g++KKA+ELS+LC+ +v +i fs++ k XP_019196308.1 15 KIENKSHLEVTFSKRRAGLFKKASELSTLCGPDVGIIAFSPSEK 58 79**************************************9865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence |
MARTSRGRQR VEMAKIENKS HLEVTFSKRR AGLFKKASEL STLCGPDVGI IAFSPSEKKV 60 FSFGHPSVER CLGENNPSPV NETGGMALVT EQFIEAHRNA RVQELNVEIS SL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-33 | M-type_MADS family protein |