PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196307.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24094.6 Da    PI: 9.4594
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.79.5e-211562249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ienks  +vtfskRr+g++KKA+ELS+ C+a+v +i fs++ k++ +
  XP_019196307.1 15 KIENKSHLEVTFSKRRAGLFKKASELSTYCGADVGIIAFSPSEKVFSF 62
                    79******************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MARTSRGRQR VEMAKIENKS HLEVTFSKRR AGLFKKASEL STYCGADVGI IAFSPSEKVF  60
SFGHPSVEAV VERVLGENNP APPVNETGGR VLAATEQFIK DHRNARVQEL NMELTRLEAI  120
FELEKKRGKA IDGVVEANRE AHGWLRDSYD DLSFQQLVTL KSGLENLMKE IHQKAHHQLM  180
AVYGNGTPFN TYASGFLRNR TFPCLITIVG LWMF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-46M-type_MADS family protein