PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196153.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 529aa MW: 57241.1 Da PI: 5.6854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.6e-12	347	389	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_019196153.1 347 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 389 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MVSRVDGMVW MDRKEGDDDE QGAGSWAQNN NNSINGGLEG PGKGGGMEMS GVAMFKSLLE 60 GEDVGWYMPS HHSLAAMQSH GDIISFGEAD HHQSNAGGLF LHPVESTSSC SPSSAPTTAL 120 NSLESQSQSQ VHYFLAPKTN NSMMMMNNPL ESGGFELGCE NGFLQNHGLS RGTGGILGGG 180 FGEFSSDENP NLLQSGGGGG PLGFGEAFND NNNNNNVLFL NNLNRSKLLK PLDNFGSIGA 240 QPTLFQKRAA LRKNNNLEVV GSCSGGIRCN GDVDKKVEVD LKRKENNGDE VRKLDTIRSS 300 NFNYDDSDEL LLLNNCNDDD ESVKTGGGDE KGKKKQAGGG LPAKNLMAER RRRKKLNDRL 360 YMLRSVVPKI SKMDRASILG DAIEYLKELV QKINDLQNEL DSPTTPFYPL TPTTATATAA 420 SSLTSRIKQE ISPSPLPSPT PQPPARVEVR VKEGRAVNIH MFCSRKPGLL LSTIRALDNL 480 GLDVQQAVIS CFNGFAMDIF RAEQYKEGDI HPDRIRAILL DSAGFQGMI

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MVSRVDGMVW MDRKEGDDDE QGAGSWAQNN NNSINGGLEG PGKGGGMEMS GVAMFKSLLE  60
GEDVGWYMPS HHSLAAMQSH GDIISFGEAD HHQSNAGGLF LHPVESTSSC SPSSAPTTAL  120
NSLESQSQSQ VHYFLAPKTN NSMMMMNNPL ESGGFELGCE NGFLQNHGLS RGTGGILGGG  180
FGEFSSDENP NLLQSGGGGG PLGFGEAFND NNNNNNVLFL NNLNRSKLLK PLDNFGSIGA  240
QPTLFQKRAA LRKNNNLEVV GSCSGGIRCN GDVDKKVEVD LKRKENNGDE VRKLDTIRSS  300
NFNYDDSDEL LLLNNCNDDD ESVKTGGGDE KGKKKQAGGG LPAKNLMAER RRRKKLNDRL  360
YMLRSVVPKI SKMDRASILG DAIEYLKELV QKINDLQNEL DSPTTPFYPL TPTTATATAA  420
SSLTSRIKQE ISPSPLPSPT PQPPARVEVR VKEGRAVNIH MFCSRKPGLL LSTIRALDNL  480
GLDVQQAVIS CFNGFAMDIF RAEQYKEGDI HPDRIRAILL DSAGFQGMI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	355	KKKQAGGGLPAKNLMAERRRRKK
2	349	356	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	2e-85	bHLH family protein