PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196152.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 843aa    MW: 94190.9 Da    PI: 6.5658
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.32.9e-23140241199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_019196152.1 140 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 231
                     99*****************************7333.34459************************************************..3488 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+v+v+r+
  XP_019196152.1 232 GDLRVGVRRA 241
                     889****996 PP
2Auxin_resp117.11.5e-38266348183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++tk++F+v+Y+Pr+s++eF++++++++++ k+++++GmRfkm+fe+e+++e+r++Gt+vg++d dp rWp+SkWr+Lk
  XP_019196152.1 266 AWHAIQTKTIFTVYYKPRTSPAEFIIPYDQYMESEKSNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDGDPQRWPESKWRCLK 348
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MTTSEVSIKG YAEQNDVGAR GVSCAGKVDS EAALYTELWR ACAGPLVTVP REGELVYYFP  60
QGHIEQVEAS TNQVADQQMP MYHLPSKILC RVVNVHLKAE PDTDEVYAQV TLMPVPDHDE  120
NAVKKENMPP PPPRFHVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL  180
VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGDLRVGVRR  240
AMRHQGNAPS SVISSHSMHL GVLATAWHAI QTKTIFTVYY KPRTSPAEFI IPYDQYMESE  300
KSNYTIGMRF KMRFEGEEAP EQRFTGTIVG IEDGDPQRWP ESKWRCLKVR WDETSSVPRP  360
DRVSPWNIEP ALTPPALNPL PVPRPKRPRS NNLPSSPDSS VLTREGSSKL CADPSPASGF  420
SRVLHSQELS TLRGTFAESN ESNSSEKPMV WPPSLEDEKI DVLSESRRCG SDKWLPLGRP  480
EPSFTDLLSG FGTQMNSSCG FSLQPRDQTS ATVSLTKRQK QYQEGSLLGK PWSIVPSGLS  540
LNLMDSGIKS HGQGSEAPYQ PRGDSRYGGH IECSMPPGHN VENQQGNWLG RQPVPYLQMP  600
AHARERMLNP MLMQQHEAAM KPKEGNCKLF GIPLISNSAT TDTEILHKNT TIESGHLHIG  660
IQSHHSHVVE SDQRLEQSNG SKVVDDGVTG NEEEKIFHIQ PADKDRERKV HSGSTRSCTK  720
VHKQGTALGR SVDLTKFNNY DELLAELDKL FDFNGELKAM NKNWMVVYTD DEGDMMLVGD  780
DPWQEFCGMV RKIYIYTKEE VQRMNPGTLN SKDEDTSSVA EGLDTGEVKK ISQIPSASSA  840
EEC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein