PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195879.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 731aa MW: 83476.1 Da PI: 6.2937

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102.3	4.7e-32	79	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvCskeg+r+ ++k+ +++ +r+r+ tr+gCka l vk +++gkw+v+++++eHnHel+p XP_019195879.1 79 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCSKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSNFVKEHNHELVP 170 9*************************************998888545677889*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MENQVIEFDI GIRGGGGSED GDGDVILENM DDAETMPNCS PAHSSDALIV SGIYTPTGDL 60 DLEPFEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR KDGAIIQRSF VCSKEGFRNL 120 NEKRTKDREI KRPRTITRVG CKAALSVKIQ DSGKWVVSNF VKEHNHELVP PDQVHCLRSH 180 RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQKSLEGD 240 TQLLLDYLRQ MDAENPDFFF AVQGDEDQFT GNVFWADHKA RANYNYFGDT VTFDTTYRSN 300 RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFIWLFKT WLAAMFGNPP VSITTDHDEV 360 IRSAIMQVFP ESRHRFCKWH IFKKCQEKLS HVFLKYPNFE ADFHKCVNLT ESTEEYESCW 420 FSLVSKYELR DHDWLQAIYS DRSHWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN 480 LNQFFKLYEK ALDSRHEKEV KADYDTMNTL PALKTPSPME KQASEVYTRK IFMRFQEELV 540 GTLTFMATKV EDEGGVTIYQ VAKFGEDHKA YCVRFNVLEM KATCSCQMFE FSGLLCRHVL 600 AVFRVTNVLT LPSHYILKRW TRNAKSTVTL EERVADAFSG YLESHTVRYN MLRHEAFKFV 660 EDGAESVSSY VIAMAALGEA SKKVSLAAKH DGKISLLNGW NQDDSISDGI QENLNIEDQQ 720 GTFTKLLSEV G

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MENQVIEFDI GIRGGGGSED GDGDVILENM DDAETMPNCS PAHSSDALIV SGIYTPTGDL  60
DLEPFEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR KDGAIIQRSF VCSKEGFRNL  120
NEKRTKDREI KRPRTITRVG CKAALSVKIQ DSGKWVVSNF VKEHNHELVP PDQVHCLRSH  180
RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQKSLEGD  240
TQLLLDYLRQ MDAENPDFFF AVQGDEDQFT GNVFWADHKA RANYNYFGDT VTFDTTYRSN  300
RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFIWLFKT WLAAMFGNPP VSITTDHDEV  360
IRSAIMQVFP ESRHRFCKWH IFKKCQEKLS HVFLKYPNFE ADFHKCVNLT ESTEEYESCW  420
FSLVSKYELR DHDWLQAIYS DRSHWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN  480
LNQFFKLYEK ALDSRHEKEV KADYDTMNTL PALKTPSPME KQASEVYTRK IFMRFQEELV  540
GTLTFMATKV EDEGGVTIYQ VAKFGEDHKA YCVRFNVLEM KATCSCQMFE FSGLLCRHVL  600
AVFRVTNVLT LPSHYILKRW TRNAKSTVTL EERVADAFSG YLESHTVRYN MLRHEAFKFV  660
EDGAESVSSY VIAMAALGEA SKKVSLAAKH DGKISLLNGW NQDDSISDGI QENLNIEDQQ  720
GTFTKLLSEV G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein