PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195861.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 425aa MW: 47531.7 Da PI: 7.1435

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.6	4.1e-52	18	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+ +yL+kkv ++++l +vi+evd++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_019195861.1 18 VPPGFRFHPTDEELLYYYLRKKVCYEPIDL-DVIREVDLNKLEPWDLKEkcRIGTgPQNEWYFFSHKDKKYPTGSRTNRATAAGFWKATGRDKPI 111 69**************************.9***********952444443456******************************** PP NAM 93 lsk...........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +++ +g++ktLvfy+grap+g+ktdW+mheyrl XP_019195861.1 112 YHHhtsssssssmsSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 158 8666655555544444***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MMMQGGAGNS ESGGQVCVPP GFRFHPTDEE LLYYYLRKKV CYEPIDLDVI REVDLNKLEP 60 WDLKEKCRIG TGPQNEWYFF SHKDKKYPTG SRTNRATAAG FWKATGRDKP IYHHHTSSSS 120 SSSMSSSRRI GMRKTLVFYT GRAPHGQKTD WIMHEYRLII DNTNLHAHSL LEEDGWVVCR 180 VFRKKNHSRC SLQPEIIMSP SLQQQDDDDE CLAAVQMNMK KKASCPSSGE LSQQQQQHSR 240 LPGEEEEAAN NNNNNNNNSF AWYQQVWDNI GCNYMHLPQL LSSESTSHHH TSPFLAPAPP 300 FTNMETTAPH GVLQTFLRPL AYSQHHHNKL NNNNNTPGGG GGSGSGSGAG DWAFLGKLLA 360 SNHRSNDDIA LTGLGDQTTY CNQLLLSQAA AADNMINIHH HLSSTSTSTQ QCFPFQHNAA 420 ASFDP

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MMMQGGAGNS ESGGQVCVPP GFRFHPTDEE LLYYYLRKKV CYEPIDLDVI REVDLNKLEP  60
WDLKEKCRIG TGPQNEWYFF SHKDKKYPTG SRTNRATAAG FWKATGRDKP IYHHHTSSSS  120
SSSMSSSRRI GMRKTLVFYT GRAPHGQKTD WIMHEYRLII DNTNLHAHSL LEEDGWVVCR  180
VFRKKNHSRC SLQPEIIMSP SLQQQDDDDE CLAAVQMNMK KKASCPSSGE LSQQQQQHSR  240
LPGEEEEAAN NNNNNNNNSF AWYQQVWDNI GCNYMHLPQL LSSESTSHHH TSPFLAPAPP  300
FTNMETTAPH GVLQTFLRPL AYSQHHHNKL NNNNNTPGGG GGSGSGSGAG DWAFLGKLLA  360
SNHRSNDDIA LTGLGDQTTY CNQLLLSQAA AADNMINIHH HLSSTSTSTQ QCFPFQHNAA  420
ASFDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.1	8e-94	NAC family protein