PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195854.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 749aa MW: 86796.6 Da PI: 8.6718

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.4e-21	58	150	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYAk +GF+vr +++k+ r g++ + + Cs+eg+++e+k+ t+k+rr+r+++r+gCka+++++k+++g ++v+ ++l H+H l+ XP_019195854.1 58 QFYEEYAKVAGFDVRHGSKRKN-RFGQVSIKYMLCSREGYKAERKEPnnssTVKQRRRRVSNRIGCKARMVMTKSDKGGYKVHAIQLRHTHCLC 150 6***************9999.66669999999****99988889999************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MENSPCTAFP GDAHRAQHEM ECEMEIHDDG TKYWTPPTTK EKTPFEGQRF KTVEDGIQFY 60 EEYAKVAGFD VRHGSKRKNR FGQVSIKYML CSREGYKAER KEPNNSSTVK QRRRRVSNRI 120 GCKARMVMTK SDKGGYKVHA IQLRHTHCLC SDAAKAFLKI NRQLDIGHKT FLAHCAKANI 180 GPTKAFRLFK EMVGSFTDVG ATCIDFCNFR RDLLAYIAEA DAQMVIEDMF KRKEDNPDFY 240 FDFDIDEEAQ LTRLFWADAE CRRNYAYYGD VMSFDATYST NRYKLVFVPF TGVDNHKRCI 300 TFGAGLIAKE DVESYEWLVT KFKTAMEYTP RCTTTDQDPA LKIVVPHIMP TTRHRFCMWH 360 IMSKVGEKVG VALLHNADFK KELNNTVWDD TLTVDEFERR WTTLMRNYNL EEHRWFAQLY 420 DARASWIPAY FNDLPMGGLL RTTSRSESEN NYFGKFTNHH SSLVEFMAQY NSAIGEQRHR 480 QSKLNAENEG SYPETKTPLS IEKHAARVYT VNIFYEFQQE VWDASFNCHI TDKNNVGDIW 540 TYKVEETGGR LFEVTEIPST KLIECACKKF NRVGLLCKHV LQVMKTKGYE KIPQHYIVPR 600 WTRDACAHPI YDVPWAKRTP KSKANETTQV ANQLWNEFYN CMGLVNGWPE KMDQMLATLQ 660 QLKKDLENER QQTQEGLNNE SVFERLVGSS KLSDIQIKPP QVAKNKGSGK RLKSNREKAA 720 TNNQKRKERT CNICDLPGHN SRTCPAKLA

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MENSPCTAFP GDAHRAQHEM ECEMEIHDDG TKYWTPPTTK EKTPFEGQRF KTVEDGIQFY  60
EEYAKVAGFD VRHGSKRKNR FGQVSIKYML CSREGYKAER KEPNNSSTVK QRRRRVSNRI  120
GCKARMVMTK SDKGGYKVHA IQLRHTHCLC SDAAKAFLKI NRQLDIGHKT FLAHCAKANI  180
GPTKAFRLFK EMVGSFTDVG ATCIDFCNFR RDLLAYIAEA DAQMVIEDMF KRKEDNPDFY  240
FDFDIDEEAQ LTRLFWADAE CRRNYAYYGD VMSFDATYST NRYKLVFVPF TGVDNHKRCI  300
TFGAGLIAKE DVESYEWLVT KFKTAMEYTP RCTTTDQDPA LKIVVPHIMP TTRHRFCMWH  360
IMSKVGEKVG VALLHNADFK KELNNTVWDD TLTVDEFERR WTTLMRNYNL EEHRWFAQLY  420
DARASWIPAY FNDLPMGGLL RTTSRSESEN NYFGKFTNHH SSLVEFMAQY NSAIGEQRHR  480
QSKLNAENEG SYPETKTPLS IEKHAARVYT VNIFYEFQQE VWDASFNCHI TDKNNVGDIW  540
TYKVEETGGR LFEVTEIPST KLIECACKKF NRVGLLCKHV LQVMKTKGYE KIPQHYIVPR  600
WTRDACAHPI YDVPWAKRTP KSKANETTQV ANQLWNEFYN CMGLVNGWPE KMDQMLATLQ  660
QLKKDLENER QQTQEGLNNE SVFERLVGSS KLSDIQIKPP QVAKNKGSGK RLKSNREKAA  720
TNNQKRKERT CNICDLPGHN SRTCPAKLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-96	FAR1 family protein