PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195351.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 335aa MW: 36875.8 Da PI: 7.0576

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.8e-08	80	104	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg XP_019195351.1 80 FKTKLCCKFRA-GVCPYITNCNFAHG 104 69*******.***********9 PP
2	zf-CCCH	17.5	7.3e-06	155	180	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C++Gd+C+F H+ XP_019195351.1 155 YKGRHCKKFYTEEGCPFGDSCTFLHD 180 78888********************7 PP
3	zf-CCCH	44.4	2.8e-14	214	239	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_019195351.1 214 WKTRICNKWETTGYCPFGSKCHFAHG 239 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MDFMGEENWG VPDQALWATE DDYSAWNNGP SAETTPSNSS HDGKYWSGSE PPNKKSRNSQ 60 GSDSHVIVPN RSKAIGKMFF KTKLCCKFRA GVCPYITNCN FAHGLEELRK PPPNWQEIVT 120 AHEGDRGGAP VESREEHQIP ILSSPDSRAE FQRSYKGRHC KKFYTEEGCP FGDSCTFLHD 180 EQSRSRESVA ISVTPTAGGC GNNSIAVNQK PTNWKTRICN KWETTGYCPF GSKCHFAHGV 240 AELHNFGGGP TEGEGKDFAS APSDVKQGGS LKPVDNTMVA SATSVPNADV YHLGSGVSLQ 300 RPSNITQRPG ERPIQKWKGP NRISKIYGDW IDDME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-117	C3H family protein