PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019195171.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 306aa    MW: 33630.6 Da    PI: 8.9451
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019195171.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+  l+ +v ++G g W+tI +         +R+  ++k++w+++
   XP_019195171.1  5 KQKWTSEEEAALKAGVSKYGVGKWSTILKDPEfaavlCTRSNVDLKDKWRNL 56
                     79**********************************999***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGAPKQKWTS EEEAALKAGV SKYGVGKWST ILKDPEFAAV LCTRSNVDLK DKWRNLHVMA  60
NGWGSRQRGK IVYKGTQSTP PKHEDNSMAL IPVVENDMEV LDAKPLVSTC ETLQAVHPKK  120
PISSLDDLIL EAIVKLKEPR GSSRSSISLY IEEHYAAPPN LERLLAANLK VLTENGRLVK  180
VKHQYRIPPS RVQLSVNMKV EPSAFPLGGK QMHYLKPEKN ATRILTKAQI DAELEKMKNM  240
TAREAAAAAA QAVAEAEAAI AEAEKAAREA EEAEAEAEAA QSLAEATSKA LIFQNSDYPR  300
LIKPIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.11e-73MYB_related family protein