PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195028.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 747aa MW: 85268.9 Da PI: 8.852

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.4	3.7e-21	57	151	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY YA ++GF+vr+s+ kk+ + g + k++ vCs++g++e++ k+ +k++r+r+++r+gC a++++k dg++ v+k+e+ H+H l XP_019195028.1 57 KFYTMYAASTGFDVRRSSDKKN-DFGIVLKKDVVCSRQGFKENRGKDtmgeagGSKKKRRRTTNRVGCGARIVMKIAPDGRYTVHKFEERHTHCL 150 6**************99998.8888***************99998999999********************************99 PP FAR1 90 a 90 + XP_019195028.1 151 C 151 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
MYITGVGSEG DVSANESDND CRMDMSPGGT KYWYTECDRS LKPYEGQLFN ALEDGIKFYT 60 MYAASTGFDV RRSSDKKNDF GIVLKKDVVC SRQGFKENRG KDTMGEAGGS KKKRRRTTNR 120 VGCGARIVMK IAPDGRYTVH KFEERHTHCL CEESQKPLMK VNRKIDIAHQ EFITKCEKAN 180 VGASKSYDIY AEIVGGPQNV GATQQDFKNY RRDLLAYMKW GDVQMVISNY LEQKTDCADM 240 YFEYEVNAND QLSRVFWADG MARKNYGAFG DVVSFDATYK TNRYHLVFVP FTGVDNHKRC 300 VTFAAALIDK EDVESYSWVL NQFKNAMGAA PPIVITDQDP AMKIAIADVF RGSRHRYCMW 360 HIMTKVGEKV GAQMSKNNEF RKALNTVVWN ENTTRTEFEI GWKSVIGKYS LNENRWLTRM 420 YEERASWVPA FCDDVFMGGL LRTTSRSEAE NRIFQGNMNK HLCLVEFFTR FEGAVRKQRK 480 NNLELTASSF GQKPHFETQL QIERSAATVY TLTIFYEVQK QISAGCFKCR VRSYTEANGV 540 KTYIVEDENE QQYTVIVQDG SNIACTCRMY ARVGLLCSHV FVVLKDERID EIPPQHITPR 600 WTRDAVKHTH IGTARDKQHG NNTFGHGNSE EGQLMNIFHR CLGKAKGRPE KLKEIRVWME 660 GFEATFGEDE MTDWTVNGKR AIMESYCGVV TPNVIEVHPP PVAKTKGSGK RMKSAREIAM 720 AEHYKKKRTC KTCGVADGHN SRSCPRK

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

MYITGVGSEG DVSANESDND CRMDMSPGGT KYWYTECDRS LKPYEGQLFN ALEDGIKFYT  60
MYAASTGFDV RRSSDKKNDF GIVLKKDVVC SRQGFKENRG KDTMGEAGGS KKKRRRTTNR  120
VGCGARIVMK IAPDGRYTVH KFEERHTHCL CEESQKPLMK VNRKIDIAHQ EFITKCEKAN  180
VGASKSYDIY AEIVGGPQNV GATQQDFKNY RRDLLAYMKW GDVQMVISNY LEQKTDCADM  240
YFEYEVNAND QLSRVFWADG MARKNYGAFG DVVSFDATYK TNRYHLVFVP FTGVDNHKRC  300
VTFAAALIDK EDVESYSWVL NQFKNAMGAA PPIVITDQDP AMKIAIADVF RGSRHRYCMW  360
HIMTKVGEKV GAQMSKNNEF RKALNTVVWN ENTTRTEFEI GWKSVIGKYS LNENRWLTRM  420
YEERASWVPA FCDDVFMGGL LRTTSRSEAE NRIFQGNMNK HLCLVEFFTR FEGAVRKQRK  480
NNLELTASSF GQKPHFETQL QIERSAATVY TLTIFYEVQK QISAGCFKCR VRSYTEANGV  540
KTYIVEDENE QQYTVIVQDG SNIACTCRMY ARVGLLCSHV FVVLKDERID EIPPQHITPR  600
WTRDAVKHTH IGTARDKQHG NNTFGHGNSE EGQLMNIFHR CLGKAKGRPE KLKEIRVWME  660
GFEATFGEDE MTDWTVNGKR AIMESYCGVV TPNVIEVHPP PVAKTKGSGK RMKSAREIAM  720
AEHYKKKRTC KTCGVADGHN SRSCPRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	116	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-91	FAR1 family protein