PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194955.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 336aa    MW: 37337 Da    PI: 6.3274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10156201555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+ + + f+ L +++P +     kK++K ++L  +++Y+++Lq
  XP_019194955.1 156 HIMAERKRRQLLSQQFQDLSTIVPGL-----KKMDKTSVLGDTIKYLRNLQ 201
                     899***********************.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MDVSPGSCFS EQDFDDLIFN GEDEIMNTIE ELAAALGEDL PNASSTSSES VDSALTGKRS  60
PSPNVVETQE RVPKQRKLHH GVVHGKPDHT TADLSPSSST PFILSFGYPN NCFPQKGEDI  120
ILETLKPEIP ATVDAARKKI NSSGRASKLP SNTYDHIMAE RKRRQLLSQQ FQDLSTIVPG  180
LKKMDKTSVL GDTIKYLRNL QERVKNLEEQ ASKQTIKSNV YVRRSQLLIE DEGSSYEDSG  240
SGEQSLPEIE TRVSDRNILL RIYCEKHRGV LTNIFTEVDK FNLSVTNTSV SHFGSLALDI  300
TIIAEMEKEK DLSVKDLVKG IRTSLQHATR ASKKSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165ERKRRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-48bHLH family protein