PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194894.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 799aa MW: 88836.2 Da PI: 5.9245

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.7	9.2e-23	163	264	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++ + ++l +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_019194894.1 163 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQRPF-QELLARDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLASGDAVLFL--RGEG 254 99**************************76333333.58999*****************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l+++++r+ XP_019194894.1 255 GDLRLGIRRA 264 99999986 PP
2	Auxin_resp	113.6	1.8e-37	290	370	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+s k++F+v+Y+Pras+++F+v+++k++k++++++ +G+Rfkm+f+++ds+ rr+sG+v+gv dldp+rWp+SkWr+L XP_019194894.1 290 TNALSCKTTFNVFYSPRASHADFIVPYQKYVKSINNRIPIGTRFKMRFNMDDSPDRRFSGVVTGVGDLDPYRWPGSKWRCL 370 689999**************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence
MEIDLNHEVR GGEEEEEEKK NGSWCYAECE EGVGLYNSSN ASSIYLELWH ACAGPLTCLP 60 KKGNVVVYFP QGHLEQAASA SPFPPLETDL PTLGLQPQIF CRVEDVQLLA NKENDDVYTQ 120 LTLLPISEPV GMSLEGKEAE DLGMDEEGGG TATAPTKSTS HMFCKTLTAS DTSTHGGFSV 180 PRRAAEDCFP PLDYKEQRPF QELLARDLHG VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN 240 LASGDAVLFL RGEGGDLRLG IRRAARPRHG LPDSIIKNQT SYSSVLSAVT NALSCKTTFN 300 VFYSPRASHA DFIVPYQKYV KSINNRIPIG TRFKMRFNMD DSPDRRFSGV VTGVGDLDPY 360 RWPGSKWRCL MVMWDDDFMS NHQERVSPWE IDSSVPFPPL SIQSSPRMKK LRTSQQALPH 420 ESHFSGSGAL LDFEESVRSS KVLQGQENLH LLSPLMGSGE KTRCQKDFGR HQNLGPTTGI 480 GKSQIGSEFV RTQPPAIYTG FLESNRFPKV LQGQEICSFR SLTMKSDINL GAWAKPDLGC 540 NIFQACQAPP KNNFYPLGSE GARKVLLPYN GIYRANQDPV MLPCITNYQI ESHVLKPISI 600 QGGGATREER IVQNYANEQS PLEKGPKLPT PETHFTNEKI EPLNGTAAPC KLFGFSLTNE 660 PSTPSSQSCG KRSCTKVHKQ GSLVGRAIDL SRLNGYDDLL VELEKLFGME DLLRDPNKGW 720 RVLYTDSEND MMVVGDDPWH EFCEVVSKIH IYTQEEVEKM TVGGMSDDTQ SCLEEAPPVT 780 DASKSSSVGQ PDSSPTLIF

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence

MEIDLNHEVR GGEEEEEEKK NGSWCYAECE EGVGLYNSSN ASSIYLELWH ACAGPLTCLP  60
KKGNVVVYFP QGHLEQAASA SPFPPLETDL PTLGLQPQIF CRVEDVQLLA NKENDDVYTQ  120
LTLLPISEPV GMSLEGKEAE DLGMDEEGGG TATAPTKSTS HMFCKTLTAS DTSTHGGFSV  180
PRRAAEDCFP PLDYKEQRPF QELLARDLHG VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN  240
LASGDAVLFL RGEGGDLRLG IRRAARPRHG LPDSIIKNQT SYSSVLSAVT NALSCKTTFN  300
VFYSPRASHA DFIVPYQKYV KSINNRIPIG TRFKMRFNMD DSPDRRFSGV VTGVGDLDPY  360
RWPGSKWRCL MVMWDDDFMS NHQERVSPWE IDSSVPFPPL SIQSSPRMKK LRTSQQALPH  420
ESHFSGSGAL LDFEESVRSS KVLQGQENLH LLSPLMGSGE KTRCQKDFGR HQNLGPTTGI  480
GKSQIGSEFV RTQPPAIYTG FLESNRFPKV LQGQEICSFR SLTMKSDINL GAWAKPDLGC  540
NIFQACQAPP KNNFYPLGSE GARKVLLPYN GIYRANQDPV MLPCITNYQI ESHVLKPISI  600
QGGGATREER IVQNYANEQS PLEKGPKLPT PETHFTNEKI EPLNGTAAPC KLFGFSLTNE  660
PSTPSSQSCG KRSCTKVHKQ GSLVGRAIDL SRLNGYDDLL VELEKLFGME DLLRDPNKGW  720
RVLYTDSEND MMVVGDDPWH EFCEVVSKIH IYTQEEVEKM TVGGMSDDTQ SCLEEAPPVT  780
DASKSSSVGQ PDSSPTLIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein