PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019194859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22610.4 Da PI: 4.776 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.2 | 4.9e-42 | 36 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+a+la XP_019194859.1 36 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPECQRADAVSSMVYEANARLRDPVYGCAGAIDQLQKQVNMLQAQLA 130 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_019194859.1 131 KAQAE 135 99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MESSDTTNSP ASSRSVSPSS SPPSPTTPLP VVVMSPCAAC KILRRRCAEK CVLAPYFPPN 60 DPIKFTTAHR VFGASNIIKF LQELPECQRA DAVSSMVYEA NARLRDPVYG CAGAIDQLQK 120 QVNMLQAQLA KAQAEVVNMQ CQHANVMALY YEMARSSSPQ ASPPQQYSFD DFSGRNGFGS 180 GYCDYIDEEN SLDSFWDQLN TLDMSV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-66 | LBD family protein |