PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194636.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 679aa MW: 74917.5 Da PI: 6.8245

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.9	1.1e-24	120	221	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_019194636.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 210 89**************************986445444..8999*****************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+++r+ XP_019194636.1 211 NGELFVGIRRA 221 999****97 PP
2	Auxin_resp	112.7	3.5e-37	289	372	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Pra+t+eFvvk++ v++ ++++++ GmRfkm fetedss++++ +Gt+++v+ dpv+WpnS+Wr+L+ XP_019194636.1 289 AATLAANSQPFEVVYYPRACTPEFVVKASAVRAGMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVDDPVHWPNSPWRLLQ 372 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MIDVMSSVKE VERCLDSQLW HACAGGMVQM PCVNSKVFYF PQGHAEHAQK AVDFGGFPRI 60 PPLVLCRVSS IRYLADFESD EVYAKIRLVP LKGNECGDGD IDGGIPGFDK NENQEKPNSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI LAKDVHGETW KFRHIYRGTP 180 RRHLLTTGWS NFVNQKKLVA GDSIVFLRAE NGELFVGIRR AKRGIGNGPE ATSGWNTGAG 240 TYTSSLYQGF SGFFSDDEKK FMRNGQGGGN CDEGLRGRSK VRGESVVEAA TLAANSQPFE 300 VVYYPRACTP EFVVKASAVR AGMRIQWCSG MRFKMPFETE DSSRISWFMG TISSVQVDDP 360 VHWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVDLVANMPP IHLSPFSPPR KKMRLPQPLE 420 FPTSGQFSLP SLLSNPLIPS SPLSCVSDNI PAGIQGARHA QFGLSLTDLH FNKLQGGGGV 480 FPFGYREFDR TISPKTPSGS LKASSENDDN LSCLLTIGNG SPNLKQNNET KTTPKLMLFG 540 KAILTEQQMS RSCSGETVNL SDGSGSALLH SGPTENSTDE PPFPWYKDEK SETGHCKVFM 600 ESDDVGRTLD LSALSSYEEL YRKLASMFGI QRSEMLSNVL YQDTTSSVRH TGDEPFSEFI 660 KTARRLTILS DSSSDNVGR

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MIDVMSSVKE VERCLDSQLW HACAGGMVQM PCVNSKVFYF PQGHAEHAQK AVDFGGFPRI  60
PPLVLCRVSS IRYLADFESD EVYAKIRLVP LKGNECGDGD IDGGIPGFDK NENQEKPNSF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI LAKDVHGETW KFRHIYRGTP  180
RRHLLTTGWS NFVNQKKLVA GDSIVFLRAE NGELFVGIRR AKRGIGNGPE ATSGWNTGAG  240
TYTSSLYQGF SGFFSDDEKK FMRNGQGGGN CDEGLRGRSK VRGESVVEAA TLAANSQPFE  300
VVYYPRACTP EFVVKASAVR AGMRIQWCSG MRFKMPFETE DSSRISWFMG TISSVQVDDP  360
VHWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVDLVANMPP IHLSPFSPPR KKMRLPQPLE  420
FPTSGQFSLP SLLSNPLIPS SPLSCVSDNI PAGIQGARHA QFGLSLTDLH FNKLQGGGGV  480
FPFGYREFDR TISPKTPSGS LKASSENDDN LSCLLTIGNG SPNLKQNNET KTTPKLMLFG  540
KAILTEQQMS RSCSGETVNL SDGSGSALLH SGPTENSTDE PPFPWYKDEK SETGHCKVFM  600
ESDDVGRTLD LSALSSYEEL YRKLASMFGI QRSEMLSNVL YQDTTSSVRH TGDEPFSEFI  660
KTARRLTILS DSSSDNVGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein