PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194539.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 538aa    MW: 60333.9 Da    PI: 6.5092
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.31.9e-1391685381374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+a+s +dl +a+ l+++l++++s +g+p+qRl ay++e+L arl  s+s++yk+l+++e +   s e l+++++++ev+P++kf++
  XP_019194539.1 168 LKQVLVTCAKAISINDLPKAECLMSQLRQMVSVSGEPIQRLGAYVLEGLVARLDASGSSIYKSLRCKEPE---SFELLSYMHILYEVCPYFKFGY 259
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ge+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   ++  l+ +g++L+k+Ae+++vpfef++ ++ +  +
  XP_019194539.1 260 MSANGAIAEAMKGENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPHIRITGIDDSTSAyaRRGGLNLVGKKLSKLAESFKVPFEFHA-ASMSDYE 353
                     ******************************************************998899999************************.7888899 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L +++gEalaVn++++lh+++desvs+ ++rd++L+lvksl+Pkvv++veqe+++n+++F+ rfle+l+yy a+f+s++++lpre++eri
  XP_019194539.1 354 VKVSDLGIRTGEALAVNFAFMLHHMPDESVSTLNHRDQLLRLVKSLNPKVVTLVEQECNTNTAPFFPRFLETLDYYIAMFESIDVNLPREHKERI 448
                     9********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r++vn++aceg+er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll +++s+ yr+ee++g+l+lgW++r Lv+ +aW+
  XP_019194539.1 449 NVEQHCLARDVVNIIACEGTERVERHELLGKWKSRFRMAGFSPYPLSSLVNATIKTLLGNYSSK-YRLEERDGALYLGWMKRDLVASCAWK 538
                     **************************************************************88.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    
MQASRLRRTG MSNTLCFQQK AEAYCVPQFQ ILDQLSHSSS DNGGSYLIQA YSDRELSSKN  60
GSHARCNSSS TVTFSPYGSP MLQQEFQSYP LDLLHQSPET KYSSPISVSS VTDDMSDFRH  120
KLKELESVML GPDSDVPECY ELTLPSTIAP PELDSWREMM EGIPVGDLKQ VLVTCAKAIS  180
INDLPKAECL MSQLRQMVSV SGEPIQRLGA YVLEGLVARL DASGSSIYKS LRCKEPESFE  240
LLSYMHILYE VCPYFKFGYM SANGAIAEAM KGENRVHIID FQIGQGSQWV TLIQAFAARP  300
GGPPHIRITG IDDSTSAYAR RGGLNLVGKK LSKLAESFKV PFEFHAASMS DYEVKVSDLG  360
IRTGEALAVN FAFMLHHMPD ESVSTLNHRD QLLRLVKSLN PKVVTLVEQE CNTNTAPFFP  420
RFLETLDYYI AMFESIDVNL PREHKERINV EQHCLARDVV NIIACEGTER VERHELLGKW  480
KSRFRMAGFS PYPLSSLVNA TIKTLLGNYS SKYRLEERDG ALYLGWMKRD LVASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein