PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019194504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | CO-like | ||||||||
Protein Properties | Length: 408aa MW: 44501.3 Da PI: 4.6156 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.7 | 3.7e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ ++e++ + +C+++ +lC +C + H+ H XP_019194504.1 4 MCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsrrHP 43 6*****************************5556666665 PP | |||||||
2 | zf-B_box | 19.2 | 2.5e-06 | 46 | 87 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C++++ +++ C + ++ lC++C ++H + H++ XP_019194504.1 46 LVCERCNAQPAFVRCIEERVSLCQNCDWAGHVSsstgstHKR 87 58*****************************66677788876 PP | |||||||
3 | CCT | 62.5 | 1.3e-21 | 351 | 394 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYkeK+ktR FeK++rY+sRKa+A+ R RvKGrFvk+ XP_019194504.1 351 RSDAVLRYKEKKKTRTFEKHVRYASRKARADVRRRVKGRFVKAG 394 889**************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence |
MGYMCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSR RHPRTLVCER CNAQPAFVRC 60 IEERVSLCQN CDWAGHVSSS TGSTHKRQAV SCYSGCPSAA ELSSMWSFLL DFPSVGDSTC 120 EQGMGSMSIT ENCPRDSQGP EGKNVAQDVS AVDDASGMKA ENESNVWMAP SVLTVDNKVQ 180 SVELPTGATN STSPKVCYSG AKGPGFYEDD PFDMDFNVDE VDISIENYEE LFGISLNTQD 240 HFFENEGMDD LFGTKEMSAA DSGCQGANAV EVNAMQPACS VDAASTDSIM SCKTEPNFCF 300 ARQQSSLSFS NITGESCAGD YQDCGASSML LMGEPPWGPS GPENSFPSSV RSDAVLRYKE 360 KKKTRTFEKH VRYASRKARA DVRRRVKGRF VKAGDAYDYD PLSPTRSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.2 | 1e-127 | CO-like family protein |