PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194502.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 414aa MW: 45041 Da PI: 4.6156

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.6	3.8e-06	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ ++e++ + +C+++ +lC +C + H+ H XP_019194502.1 4 MCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsrrHP 43 6*****************************5556666665 PP
2	zf-B_box	19.2	2.6e-06	46	87	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C++++ +++ C + ++ lC++C ++H + H++ XP_019194502.1 46 LVCERCNAQPAFVRCIEERVSLCQNCDWAGHVSsstgstHKR 87 58*****************************66677788876 PP
3	CCT	62.5	1.3e-21	357	400	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYkeK+ktR FeK++rY+sRKa+A+ R RvKGrFvk+ XP_019194502.1 357 RSDAVLRYKEKKKTRTFEKHVRYASRKARADVRRRVKGRFVKAG 400 889**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MGYMCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSR RHPRTLVCER CNAQPAFVRC 60 IEERVSLCQN CDWAGHVSSS TGSTHKRQAV SCYSGCPSAA ELSSMWSFLL DFPSVGDSTC 120 EQGMGSMSIT ENCPRDSQGP EGKNVAQDVS AVDDASGMKA ENESNVWMAP SVLTVDNKVQ 180 SVELPTGATN STSPKVCYSG AKGPGFYEDD PFDMDFNVDE VDISIENYEE LFGISLNTQD 240 HFFENEGMDD LFGTKEMSAA DSGCQGANAV EGALIGQVNA MQPACSVDAA STDSIMSCKT 300 EPNFCFARQQ SSLSFSNITG ESCAGDYQDC GASSMLLMGE PPWGPSGPEN SFPSSVRSDA 360 VLRYKEKKKT RTFEKHVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLSP TRSY

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MGYMCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSR RHPRTLVCER CNAQPAFVRC  60
IEERVSLCQN CDWAGHVSSS TGSTHKRQAV SCYSGCPSAA ELSSMWSFLL DFPSVGDSTC  120
EQGMGSMSIT ENCPRDSQGP EGKNVAQDVS AVDDASGMKA ENESNVWMAP SVLTVDNKVQ  180
SVELPTGATN STSPKVCYSG AKGPGFYEDD PFDMDFNVDE VDISIENYEE LFGISLNTQD  240
HFFENEGMDD LFGTKEMSAA DSGCQGANAV EGALIGQVNA MQPACSVDAA STDSIMSCKT  300
EPNFCFARQQ SSLSFSNITG ESCAGDYQDC GASSMLLMGE PPWGPSGPEN SFPSSVRSDA  360
VLRYKEKKKT RTFEKHVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLSP TRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-126	CO-like family protein