PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019194463.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 23847 Da PI: 6.751 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.1 | 1.1e-41 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++lrr+C++ Cvlapyfp ++p kf ++h++FGasn++k+l++l e++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+aela XP_019194463.1 52 PCAACRILRRRCVDRCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELAEDQRADAVNSMVYEAGARIRDPVYGCAGAICQLQKQMSELQAELA 146 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_019194463.1 147 KAQAE 151 *9987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence |
MGYSTDKRTT TTTSHLTSSP SSPSSSAVSG GGCVGSPASP APPSPPPVIL TPCAACRILR 60 RRCVDRCVLA PYFPPTDPLK FTIAHRVFGA SNIIKMLQEL AEDQRADAVN SMVYEAGARI 120 RDPVYGCAGA ICQLQKQMSE LQAELAKAQA EILNLQCQNT NLKTLVCMQM ASSSSQQQQR 180 HHHDNLSSPV QEHLSSYESG SSFLLEDCSF SSDILEPMLW G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-59 | LBD family protein |