PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194406.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 520aa MW: 56336.9 Da PI: 8.1948

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019194406.1 87 FVCEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	12.7	0.00039	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_019194406.1 164 WKCDKCSKRYAVQSDWKAHSKTC 186 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MMMKGLVIQQ PHSALDQENM SNLTSTASGE ASVSDTNGGI YPHQQQVFAN PNQSQPVKKK 60 RNQPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSN 120 KEVIRKKVYV CPEASCVHHE PARALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK 180 AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RRVMTGSQIH HPSQPGCSSA 240 SNINFQFPAF QPPQVGSHGD HSASPAFPSV KKEQQHYNGM GISGGGGFNL RPEIPPWLIT 300 CQPLVGATHG PPPPLFHPGG LDFLHHHHQE FTQVQNPNPN NNLGGGPTLP PFHPTASSPQ 360 ISATALLQRA AQMGATGIGS GTASSAAPAM LMIGPHTDHV SADQAKNLSS REAVAGDDVI 420 SSSAAAAPPH GGSLLHDITA GATSFSSSTT DPHGFDASSF EDPFGGINGA NDDMTKDFLG 480 LRPLSHSDIF NITSLVDNPA SDHHHHHHHH QPQVQKAWPS

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MMMKGLVIQQ PHSALDQENM SNLTSTASGE ASVSDTNGGI YPHQQQVFAN PNQSQPVKKK  60
RNQPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSN  120
KEVIRKKVYV CPEASCVHHE PARALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK  180
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RRVMTGSQIH HPSQPGCSSA  240
SNINFQFPAF QPPQVGSHGD HSASPAFPSV KKEQQHYNGM GISGGGGFNL RPEIPPWLIT  300
CQPLVGATHG PPPPLFHPGG LDFLHHHHQE FTQVQNPNPN NNLGGGPTLP PFHPTASSPQ  360
ISATALLQRA AQMGATGIGS GTASSAAPAM LMIGPHTDHV SADQAKNLSS REAVAGDDVI  420
SSSAAAAPPH GGSLLHDITA GATSFSSSTT DPHGFDASSF EDPFGGINGA NDDMTKDFLG  480
LRPLSHSDIF NITSLVDNPA SDHHHHHHHH QPQVQKAWPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	127	KLKQRSNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-121	C2H2 family protein