PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194374.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 427aa MW: 46560.5 Da PI: 9.1628

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	188	210	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L+ H + H XP_019194374.1 188 TCHKCGEQFGKWEALEAHHLSkH 210 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MGEKKNMPAV WFSLKRSLHC KTEPSEVHEP KTKKQLGTIL TRKAAGRRSG CSRSIANLRD 60 VIHGSKRHLE KPPTCSPRSI GSSDFLNPIT HEVILSNSTC ELKITSFGGL HDGLGGGGDG 120 GGSFLGTLRP GTPGPGGHPT MHYFNSSYRN PVPASPPRRT SALLGEKEMS GFASKPCRAD 180 SNGCSVVTCH KCGEQFGKWE ALEAHHLSKH AVTELLEGDS SRKIVEIICR SSWVKSESQC 240 GRIERVLKVH NTQKTLARFE EYRETVKMKA SKLPKKHPRC LADGNELLRF YGTTVACCLG 300 MDGCCSLCAS DKCCVCRIIR SGFSTKKELK GGIGVFTTST SGRAFECIEM HGDDLSQSQS 360 QSQRKAMIVC RVIAGRVHRP LENIQEMAGQ TGFDSLAGKV GLYSNIEELY SLNPRALLPC 420 FVVICKS

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MGEKKNMPAV WFSLKRSLHC KTEPSEVHEP KTKKQLGTIL TRKAAGRRSG CSRSIANLRD  60
VIHGSKRHLE KPPTCSPRSI GSSDFLNPIT HEVILSNSTC ELKITSFGGL HDGLGGGGDG  120
GGSFLGTLRP GTPGPGGHPT MHYFNSSYRN PVPASPPRRT SALLGEKEMS GFASKPCRAD  180
SNGCSVVTCH KCGEQFGKWE ALEAHHLSKH AVTELLEGDS SRKIVEIICR SSWVKSESQC  240
GRIERVLKVH NTQKTLARFE EYRETVKMKA SKLPKKHPRC LADGNELLRF YGTTVACCLG  300
MDGCCSLCAS DKCCVCRIIR SGFSTKKELK GGIGVFTTST SGRAFECIEM HGDDLSQSQS  360
QSQRKAMIVC RVIAGRVHRP LENIQEMAGQ TGFDSLAGKV GLYSNIEELY SLNPRALLPC  420
FVVICKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-167	C2H2 family protein