PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194098.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 534aa    MW: 60035.8 Da    PI: 5.0368
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.89.5e-1351655342374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e L++cA+a++++d  +a++ +++l++++s  g+p+qRl ay++e++ arla+s+s++ykal+++e +   s e ++++ l++ev+P++kf++l
  XP_019194098.1 165 KESLVACAKAIEDNDIPRAEWWMSELRTMVSVCGEPIQRLGAYMLEGMVARLASSGSSIYKALRCKEPT---SNELFSYMYLLYEVCPFFKFGYL 256
                     789*****************************************************************9...8999999999************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI++a++ eervHiiDf+isqG+QW++L++aLa+Rp+gpp++ iTg+++++s   +   le +g+rL+ +Ae+++vpfef++ va +++d+
  XP_019194098.1 257 SANGAIVDAMKDEERVHIIDFQISQGTQWITLIHALAARPGGPPQICITGIDDSTSAhaRGGGLEIVGKRLSTLAESCKVPFEFRP-VAASCADV 350
                     *****************************************************9888889999***********************.7999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++e+L+v+pgEalaVn+ l lh+++de+v ++++rd+++++v+sl Pkvv++veqe+d+n+ +F+ rf+e+l+yy a+f+s+++ lpr+++eri+
  XP_019194098.1 351 KIEHLNVRPGEALAVNFPLVLHHMPDEDVGTQNHRDRLVRMVRSLFPKVVTLVEQESDTNKVPFFPRFVETLNYYLAVFESIDVALPRDHKERIN 445
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+re+vn++aceg+er+erhe lekWr+r+++aGF+p+pls+++++++k+ll+++ +d y++ee++++l+lgW++r+Lv+ +aW+
  XP_019194098.1 446 VEQHCLAREVVNILACEGEERVERHEVLEKWRSRFSMAGFTPYPLSSSVNATIKTLLENYCKD-YTLEERDQALYLGWMNRALVASCAWQ 534
                     *************************************************************77.*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    
MQPSQNNMNM DGSRRFYNQP VQDLESYCLP TPGGLDNQFL AVGGAEFFAQ TNDQYHDVMS  60
YGYPGHSYTA DSFLSDTSGI LQQDSQLYLA DVHHHSPEET YHSAASKSSL TDENDLKHKL  120
RELESAMFGH GSEAYGSNMG NPDQMSSEAE KLEEMMGITS RRGLKESLVA CAKAIEDNDI  180
PRAEWWMSEL RTMVSVCGEP IQRLGAYMLE GMVARLASSG SSIYKALRCK EPTSNELFSY  240
MYLLYEVCPF FKFGYLSANG AIVDAMKDEE RVHIIDFQIS QGTQWITLIH ALAARPGGPP  300
QICITGIDDS TSAHARGGGL EIVGKRLSTL AESCKVPFEF RPVAASCADV KIEHLNVRPG  360
EALAVNFPLV LHHMPDEDVG TQNHRDRLVR MVRSLFPKVV TLVEQESDTN KVPFFPRFVE  420
TLNYYLAVFE SIDVALPRDH KERINVEQHC LAREVVNILA CEGEERVERH EVLEKWRSRF  480
SMAGFTPYPL SSSVNATIKT LLENYCKDYT LEERDQALYL GWMNRALVAS CAWQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein