PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194004.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 550aa MW: 63290.5 Da PI: 8.9417

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.2	6.4e-09	5	47	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 t+ ++r+r+++r+gCka++++++ k+g++ v+ +el H+H l+ XP_019194004.1 5 TQPKKRKRVSKRVGCKARIVITRCKTGNYTVHAVELWHTHCLC 47 568999**********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MVNTTQPKKR KRVSKRVGCK ARIVITRCKT GNYTVHAVEL WHTHCLCSDI GRPFLKINRK 60 LDIGHKIFLA NCARANIGST KSWRLYKEMV GSFTDIGATS TDFCNFRRDL LAYIAGADAQ 120 MVVEDMYKNK EANPDFYFDF DLNEDRQLCR LFWADAISRK NFACFGDVMS FDATYSTNRY 180 KLVFVPFTGV DNHKRSITFG AGLIAREDVE SYEWLLKSFK TAMGYTPRCT ITDQDLALKV 240 AIPNIMPETR HRFCMWHIMS KVGDKAGPAL AKNIDFKKAL NNAVWDETLS ATEFELKWAK 300 VMQDYNLVEH RWFNQLYEAR ASWIPAYFQD ILMGGLLKTT SRSESENSYF GKFTNHHCSL 360 VEFIMQYNRA IEEQRHNQVK LNADCEGSTP EPKTPLGMER QAAALYTINI FYEFQKEIWA 420 GSFTCKITNK TLEAGNRRYV VHETGAKLYE VTHQEATNKT ECSCNKFNRV GILCKHVLAI 480 FKDKGIEEIP GHYIVPRWTR DACARPMYDI VLKGSPNTQG GTNSNQLRTN SGMNSTTAWD 540 WLMEVKMKWL

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MVNTTQPKKR KRVSKRVGCK ARIVITRCKT GNYTVHAVEL WHTHCLCSDI GRPFLKINRK  60
LDIGHKIFLA NCARANIGST KSWRLYKEMV GSFTDIGATS TDFCNFRRDL LAYIAGADAQ  120
MVVEDMYKNK EANPDFYFDF DLNEDRQLCR LFWADAISRK NFACFGDVMS FDATYSTNRY  180
KLVFVPFTGV DNHKRSITFG AGLIAREDVE SYEWLLKSFK TAMGYTPRCT ITDQDLALKV  240
AIPNIMPETR HRFCMWHIMS KVGDKAGPAL AKNIDFKKAL NNAVWDETLS ATEFELKWAK  300
VMQDYNLVEH RWFNQLYEAR ASWIPAYFQD ILMGGLLKTT SRSESENSYF GKFTNHHCSL  360
VEFIMQYNRA IEEQRHNQVK LNADCEGSTP EPKTPLGMER QAAALYTINI FYEFQKEIWA  420
GSFTCKITNK TLEAGNRRYV VHETGAKLYE VTHQEATNKT ECSCNKFNRV GILCKHVLAI  480
FKDKGIEEIP GHYIVPRWTR DACARPMYDI VLKGSPNTQG GTNSNQLRTN SGMNSTTAWD  540
WLMEVKMKWL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-88	FAR1 family protein